Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2018
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 31   0.57 
SB_52836| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.99 
SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)             29   2.3  
SB_24835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)                 27   5.3  
SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 342 CLEWLRRTQRRSQTAPGPCPPR 407
           CL W RR +RR    P PCPPR
Sbjct: 73  CLSWRRRRRRRR---PPPCPPR 91


>SB_52836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 118 YSTSLTDPACTGVISSISFVQRNSARYPVNRC 23
           Y+ ++ DP     I  +  VQR +AR+ +NRC
Sbjct: 100 YACTVWDPCTKKNIYKLEMVQRRAARFTLNRC 131


>SB_29947| Best HMM Match : Fasciclin (HMM E-Value=2.3e-33)
          Length = 725

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 220 CRDHLICRYTGPSAGPCMTPEG 285
           C D+ IC+YTGP    C    G
Sbjct: 584 CHDNAICKYTGPGQSICACNAG 605


>SB_24835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 312 VLLDKSIDSSCLEWLRRTQRRSQTAPGP 395
           V LD++  S C    RRTQRR +  P P
Sbjct: 62  VALDRAWSSDCCVTARRTQRRGRQTPFP 89


>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 220 CRDHLICRYTGPSAGPCMTPEGLVLPD 300
           C    IC YTGP    C  P G  L +
Sbjct: 254 CEGRAICVYTGPGKSICKCPPGYKLDE 280


>SB_18909| Best HMM Match : RVT_1 (HMM E-Value=1.2e-28)
          Length = 591

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 157 FVKTRTYCSLY---IFYSTSLTDPACTGVISSISFVQRNSARYPVN 29
           FV+ R Y +L    + +++S+ DP     I  +  VQR +AR+  N
Sbjct: 347 FVRERAYTTLVRPRVEFASSVWDPHVQKQIKDLESVQRRAARFAKN 392


>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/55 (23%), Positives = 30/55 (54%)
 Frame = -3

Query: 399 DRGPVPFGIVSESVSAIPDSSSLLICQARPGLVIR*HESFRSHARSSRWPGVATN 235
           ++ P    I+ ESV++IPD   ++I  +   L +   + + + +  +R  GV+++
Sbjct: 108 NKAPAQSSIIYESVTSIPDEGMMII--SEENLPLEQEDGYNNGSTQTRRDGVSSS 160


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 369 RRSQTAPGPCPPRRKTSA*SNVRP 440
           RR + +P P PPRR+  + SN  P
Sbjct: 920 RRRRKSPSPSPPRRRRRSPSNSPP 943


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,943
Number of Sequences: 59808
Number of extensions: 298745
Number of successful extensions: 788
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)