Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2018
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL032630-11|CAA21570.1|  296|Caenorhabditis elegans Hypothetical...    27   4.6  
AC024817-35|AAP13745.1|  232|Caenorhabditis elegans Hypothetical...    27   4.6  
AC024817-34|AAK68529.2|  249|Caenorhabditis elegans Hypothetical...    27   4.6  

>Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical
           protein F36G9.8 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = -1

Query: 158 ICKNTHL----LFSLYFLQH*LNRPRMYRRYFINFVRSKKFST-LPSQSM 24
           +C +TH     L  LYF +H       YR++  + +RS+KFST LP+  +
Sbjct: 285 LCMSTHTFLGTLSMLYFNRH-------YRQWLCSIIRSRKFSTSLPTSKI 327


>AL032630-11|CAA21570.1|  296|Caenorhabditis elegans Hypothetical
           protein Y62H9A.11 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 7/16 (43%), Positives = 15/16 (93%)
 Frame = -1

Query: 107 LNRPRMYRRYFINFVR 60
           +++P+ Y+RYF+NF++
Sbjct: 241 IDKPQKYKRYFLNFIK 256


>AC024817-35|AAP13745.1|  232|Caenorhabditis elegans Hypothetical
           protein Y54G2A.5b protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 324 KSIDSSCLEWLRRTQRRSQTAPGPCPPRRKTS 419
           K++   C+E  R   +   +   PC PRR+ S
Sbjct: 79  KTVSPMCMEEFRNILQNGVSTGSPCSPRRRAS 110


>AC024817-34|AAK68529.2|  249|Caenorhabditis elegans Hypothetical
           protein Y54G2A.5a protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 324 KSIDSSCLEWLRRTQRRSQTAPGPCPPRRKTS 419
           K++   C+E  R   +   +   PC PRR+ S
Sbjct: 79  KTVSPMCMEEFRNILQNGVSTGSPCSPRRRAS 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,521,001
Number of Sequences: 27780
Number of extensions: 212466
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)