Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2017
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     26   0.26 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    26   0.26 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           26   0.26 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   7.5  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 342 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAF 449
           RQ  PW RKV   G    ++ TF P ++  R R A+
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQRTAY 240


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 342 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAF 449
           RQ  PW RKV   G    ++ TF P ++  R R A+
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQRTAY 240


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 342 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAF 449
           RQ  PW RKV   G    ++ TF P ++  R R A+
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQRTAY 240


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 76  TVIHNDSGHIFYFFFALVGKRAYG 5
           T IH  + H FY + A+     +G
Sbjct: 195 TQIHQQTNHTFYPWMAIADSMTFG 218


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 198 GLRSEASSRLGTCFYW 151
           G  SEA      CFYW
Sbjct: 306 GATSEAEKIAKICFYW 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,667
Number of Sequences: 336
Number of extensions: 3840
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)