Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2017
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    29   0.50 
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   4.6  
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    26   6.1  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   8.1  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   8.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.1  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 164 VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD 304
           +P REE S + P  +  V      + PS+K  G IS  K++  F  D
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFFFDD 151


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 82  PPTVIHNDSGHIFYFFFALVGKRAY 8
           PPT +HN+  +IFY  +  +G+  +
Sbjct: 28  PPTNLHNNKKNIFYTRYDCIGEGGF 52


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = +3

Query: 84  PDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAV 263
           P  P S      LF D   +   + NKS +  +L      LG      RIDI   K  A+
Sbjct: 271 PICPNSLSFRPVLFPDTFKISIETSNKSRVRPQLSIDGRPLGLTDIGQRIDITSVKDNAI 330


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = +1

Query: 19  CLQEQKKNKKCDQ----NHCVSRWADRI-FPGRRRP 111
           C + QK NKKCD       C+    D I  P ++RP
Sbjct: 292 CAKCQKDNKKCDDARPCQRCIKAKTDCIDLPRKKRP 327


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 468 PMICKRSKMSLRNKVTLYK 524
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = -2

Query: 706  HDFRIDSRPRSSCRSTFLTNHEAPTANLQKRDCRDWRVSMCV 581
            +DF  +  P      T+L  H  P   L   DC  W  S  +
Sbjct: 2280 NDFIAEIAPEGEEFLTYLRKHSHPMLKLSSSDCYLWSSSFYI 2321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,263
Number of Sequences: 5004
Number of extensions: 61302
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)