Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2017
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0049 - 9318578-9319312                                           32   0.52 
03_05_0955 + 29168771-29170507                                         29   4.8  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   6.4  
01_06_1724 - 39452858-39454309                                         28   6.4  
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    28   8.4  

>11_03_0049 - 9318578-9319312
          Length = 244

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 78  GGPDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 218
           GG D+P +PP ++A    D   Y   R+K ++  +    +   G W+
Sbjct: 145 GGGDLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191


>03_05_0955 + 29168771-29170507
          Length = 578

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 57  ESLCITVGGPDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAA 197
           E L  T   P +P  PPTH A  A  T    + R ++  A   Q AA
Sbjct: 139 ERLIFTTPPPPVPSPPPTHAAATATATAATAAPRPEAAPALLPQPAA 185


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 147 YSSRNKSLIAKKLQSAALALGQWFRKWR 230
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 371 QVPGRYPGCIDDIPPAYKISP*PCRVY 451
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 44  KNVTRIIVYHGGRTGYSPVAADPFSFI 124
           K+  R++VYHGGR G      + + F+
Sbjct: 252 KDSVRVLVYHGGRRGAQKYDFNKYDFV 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,896,366
Number of Sequences: 37544
Number of extensions: 467672
Number of successful extensions: 1277
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)