Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2017
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    48   9e-06
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    40   0.002
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    40   0.002
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    36   0.038
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    34   0.087
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    28   7.6  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 44/168 (26%), Positives = 74/168 (44%)
 Frame = +3

Query: 123 FADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXX 302
           FADDT +Y +S  K+     LQSA  A+  W +  ++ +N +K+  V             
Sbjct: 108 FADDTKLY-ASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHVTV----------- 155

Query: 303 XXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICK 482
                +     L   PI      + LG  +   + F  H +   + A F L  ++    K
Sbjct: 156 -GKRRIDFKYHLDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFN---K 211

Query: 483 RSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 626
            S  + +  + LYKT IRP + Y +VV +   ++   T++S+Q+ F R
Sbjct: 212 YSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 40/166 (24%), Positives = 69/166 (41%)
 Frame = +3

Query: 129 DDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFQXXXXXXXXXXXX 308
           DDT +Y S+  K+     LQ+A  A+  W R  ++ ++ +K+  V               
Sbjct: 80  DDTKLYVSTP-KAETENNLQAALDAVVDWTRGAKLTLSQSKTVHVTVGRCRKDFKYH--- 135

Query: 309 XXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRS 488
                    L   PI      + LG  +   + F  H K   + A F L  ++      +
Sbjct: 136 ---------LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSN 186

Query: 489 KMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 626
           K  +   + LYKT IRP + Y +VV +   ++    ++S+Q+ F R
Sbjct: 187 KKLM---ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/84 (27%), Positives = 41/84 (48%)
 Frame = +3

Query: 348 PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 527
           PI  +   + LG+  D+ +TF+PHIK +    +  L R   ++     +       L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244

Query: 528 CIRPVMTYASVVFAHAARTHIDTL 599
            I P++ Y S V++    + + TL
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 26/112 (23%), Positives = 45/112 (40%)
 Frame = +3

Query: 87  DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVL 266
           D+P    T L  +ADD ++    +     A+K+Q     + ++ ++  + I+  KST  +
Sbjct: 550 DMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTV 609

Query: 267 FQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHI 422
           F                  P I     PIP     K LG+TL+     + H+
Sbjct: 610 FS--------CDPKEHKTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHV 653


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +3

Query: 348  PIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKT 527
            PI  +  V+ LG+  D  + F  HI  V   +   + R   ++   S  S +    LYKT
Sbjct: 969  PITPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKT 1025

Query: 528  CIRPVMTYASVVFA 569
             + P+M Y S V+A
Sbjct: 1026 YVAPIMNYCSEVYA 1039


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 167 PNREEASERSPSPRTVVPKMAHRHQPSEKYCGAISEGKLHTDF-LPD*EEESHTP 328
           PN ++ S   P+PR + P+ A R  PS+    A SE K  + F   D  E+  TP
Sbjct: 540 PNVQQESVVVPAPRRLSPQRAPR--PSQNSPNAYSERKSFSAFPSEDPSEDYETP 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,953,292
Number of Sequences: 27780
Number of extensions: 364059
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)