Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2015
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 29 0.61
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 29 0.80
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.8
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 27 3.2
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 7.5
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 25 7.5
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 7.5
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 25 7.5
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 9.9
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.9
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 9.9
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 429 ASPVRKRSIYLRAGRLMNSLRSSESEHTKVG 521
A PV+K ++ R+ +LRSSES HT G
Sbjct: 44 AKPVKKAPSVVQPRRVSRTLRSSESVHTNHG 74
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 277 NTTSPRIYQTGEEAVGDAVRERGRQLGALGMRSNERGQVTAHC 149
NT PR+Y E + L ++G RS + GQV HC
Sbjct: 5 NTQLPRMYSAPPGHSKAVSTELNKDLSSVGGRSAKLGQVIHHC 47
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 567 NKPQAI*GSPSRCLRSNSAQCSRRTHKN 650
N P + G PS L ++SA CS + HK+
Sbjct: 65 NTPNSSNGFPSETLVTSSAHCSTQPHKD 92
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +3
Query: 387 LSRIPAFESVHDQAA-------SPVR-KRSIYLRAGRLMNSLRSSESEHTKVGFTHGACF 542
+S + +ESVHD + SP+ +++ YL G + ++ ++ +GFT+ A F
Sbjct: 73 MSELSMYESVHDSSFNLGTRPNSPLGFRQTAYLSLGFCIIWFAANYFSNSSLGFTNVASF 132
Query: 543 TIYS 554
TI S
Sbjct: 133 TIIS 136
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 443 PHRTCCLIMNRLKCWYARKLFRLCI 369
PH+ C +K WY+ K F L +
Sbjct: 209 PHQRCSFYAQVIKTWYSDKNFTLYV 233
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -2
Query: 633 ANIERNSIGGTLKDYLISLGVC 568
A+++ N + ++KDYL+ G+C
Sbjct: 184 ASVQNNLLKWSVKDYLLKAGLC 205
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 437 RTCCLIMNRLKCWYARKLFRLCIVWNKCLR 348
+ C L + L WY C+VWN +R
Sbjct: 179 KLCSLCEDNLPEWYFEVHSDFCLVWNDLVR 208
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 19 DRATLRECVDTEHLGGLVLVSLA 87
D AT+ +D EH G VLV LA
Sbjct: 62 DGATILSLLDVEHPAGKVLVELA 84
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.9
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Frame = -1
Query: 286 RSQNTTSPRIYQTGEEAVGDAVRERGRQLGALGMRS----NERGQVTAHCSLTQQVADLA 119
R T R+Y E A V E + AL +S + + + S Q + L
Sbjct: 138 RRLRTQFERVYPVPEWAKKQDVTEEEDEFNALSEKSVIPKSLKSLFKSSVSYINQSSKLL 197
Query: 118 EEAGCRLLHLS-RGIQVPTHQGARYLHIHEALP 23
+ L Q P+H G R + IH P
Sbjct: 198 APGTINIKRLKDANFQAPSHSGIRCMSIHPYFP 230
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 186 MPSAPSCRPLSRTASPTASS 245
MPS+PS P S + SPT+ S
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPS 1591
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = -3
Query: 371 IVWNKCLRANTWDPSPRTCXRXCGPSRSAQPKYNKSEN 258
++ L+ N W +P + CG + P Y ++ N
Sbjct: 268 VMTGTALQTNCWVDAPNSYNAGCGVENPSGPSYGEAFN 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,058
Number of Sequences: 5004
Number of extensions: 50228
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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