Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2015
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    63   2e-10
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824...    29   4.4  
08_01_0330 + 2963007-2963540,2964935-2965147                           29   4.4  
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183...    28   7.7  
06_03_1150 + 28022633-28023374,28023501-28023565                       28   7.7  
06_01_1013 - 7931756-7935109                                           28   7.7  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
 Frame = -2

Query: 414  PTQMLVCEK-VIPIVHRLEQVSSGEHVGSLAENLLXXXRSQPQ-----CAAKIQQVREFT 253
            PTQ  V E+ ++P++H LE V     +G+ AENLL    ++        A KIQ++R  T
Sbjct: 4586 PTQKCVDEEDILPLLHALEGVPGENEIGARAENLLDTLANKENNGDGFLAEKIQELRHAT 4645

Query: 252  RQEKKRLAMR----FAKGAGSWARWACXXXXXXXXXXXXXXXXXXXXXXXXXXAVCCICR 85
            R E +R A++      +G G    +A                             C +CR
Sbjct: 4646 RDEMRRRALKKREMLLQGLGMRQEFA-SDGGRRIVVSQPIIEGLDDVEEEEDGLACMVCR 4704

Query: 84   EGYKYQPTKVLGIYTFTKR 28
            EGY  +PT +LG+Y F+KR
Sbjct: 4705 EGYTLRPTDMLGVYAFSKR 4723


>11_04_0441 +
           17781533-17781775,17782007-17782114,17782386-17782471,
           17782546-17782807,17782921-17783120,17783770-17784012,
           17784118-17784394,17784625-17784759,17784880-17784960,
           17785311-17785406,17785661-17785756,17785834-17785890,
           17785967-17786035,17786154-17786240,17786534-17786635,
           17786730-17786819,17786900-17786980,17787573-17787653,
           17787761-17787856,17787937-17787993,17788093-17788137,
           17788218-17788346
          Length = 906

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 405 MLVCEKVIPIVHRLEQVSSGEHVGSLAE 322
           +L+CE     + R E VS G+H G+ AE
Sbjct: 460 LLLCEDAYRCIQREESVSEGQHDGNSAE 487


>08_01_0330 + 2963007-2963540,2964935-2965147
          Length = 248

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/64 (25%), Positives = 22/64 (34%)
 Frame = +3

Query: 54  APWWVGTCIPRDXXXXXXXXXXXXXXTCCVREQCAVTCPRSLLRMPSAPSCRPLSRTASP 233
           +P W   CIP                 CC  E   +TC   L       +   L R  SP
Sbjct: 116 SPAWAIDCIPAAGAEAETSAFEVYVAGCCAGEPAVLTCALRLATPEEQKAAGGLVRRRSP 175

Query: 234 TASS 245
           T+++
Sbjct: 176 TSNA 179


>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
            12718443-12718465,12718616-12720653,12720736-12720965,
            12722207-12722329,12722438-12723010,12724684-12724733,
            12726828-12726923,12726987-12727394,12727609-12727795
          Length = 1407

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
 Frame = +3

Query: 57   PWWVGTCIPRDXXXXXXXXXXXXXXTCCVREQCAVTCPRS---LLRMPSAPSCRPLSR-T 224
            PW + +C P D                C    C    P +   LL +    S  P  R T
Sbjct: 1327 PWMLASCAPGDDAWSRRATVIVPVPASCRSSSCRTLSPVAFAVLLTVTQGSSTAPTWRDT 1386

Query: 225  ASPTASSP 248
            A P A+SP
Sbjct: 1387 APPPAASP 1394


>06_03_1150 + 28022633-28023374,28023501-28023565
          Length = 268

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 153 CAVTCPRSLLRMPSAPSCRPLSRTASPTASSP 248
           C  T P     M + PS  PL  +A+P  +SP
Sbjct: 234 CGATVPLQTFSMCNTPSVPPLMPSAAPAPASP 265


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 275 ILAAHCGWDRXXXSRFSARDPTCSPEDTCSRRCTIGI 385
           + A HCG  R    R S  DP  + +  C ++   G+
Sbjct: 411 VTACHCGKTRLLEKRASCLDPIPTCDKVCDKKLPCGV 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,827
Number of Sequences: 37544
Number of extensions: 366848
Number of successful extensions: 1370
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)