Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2015
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46) 59 3e-09
SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4) 31 0.64
SB_27243| Best HMM Match : DUF1537 (HMM E-Value=5e-27) 29 2.6
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_21558| Best HMM Match : TPR_2 (HMM E-Value=0.13) 29 3.4
SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31) 28 6.0
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017) 28 7.9
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 7.9
>SB_54281| Best HMM Match : KAP_NTPase (HMM E-Value=0.46)
Length = 911
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/50 (58%), Positives = 34/50 (68%)
Frame = -2
Query: 411 TQMLVCEKVIPIVHRLEQVSSGEHVGSLAENLLXXXRSQPQCAAKIQQVR 262
TQ +V E IP++HRLEQVSS E VGSLAENLL R PQ K++ R
Sbjct: 555 TQSIVGETSIPVIHRLEQVSSEEMVGSLAENLLEALRESPQVGKKVRHFR 604
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -1
Query: 253 QTGEEAVGDAVRERGRQLGALGMRSNERGQVTAH-CSLTQQVADLAEEAG 107
QT E A+ R +QLGALGM++ G++ A SL +++ DL+EE G
Sbjct: 639 QTRTEKKRLAMAMREKQLGALGMQTMSGGKIVAKPSSLMREMEDLSEETG 688
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -1
Query: 505 SDSDDLKEFISRPALKYILRFLTGL 431
S+ D KEF++RP+L Y+LR L+GL
Sbjct: 524 SEVDAWKEFLARPSLPYVLRLLSGL 548
Score = 34.3 bits (75), Expect = 0.091
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = -2
Query: 72 YQPTKVLGIYTFTKRCPIDEYE 7
++ +VLGIYTFTKRC ++++E
Sbjct: 755 HEAPRVLGIYTFTKRCILEDFE 776
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2
Query: 303 RSQPQCAAKIQQVREFTRQEKKRLAM 226
R Q K+ +VR TR EKKRLAM
Sbjct: 624 RENQQIGKKVNEVRRQTRTEKKRLAM 649
>SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)
Length = 964
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 411 TQMLVCEKVIPIVHRLEQVSSGEHVGSLAENLLXXXRSQPQCAAKIQQVREFTRQEKK 238
T + + + +P+V E+ SGEH ++A L R C + + RE T E K
Sbjct: 687 TSLQLLKSGVPVVMSKERGDSGEHQYAVATQLRERQRQYRVCGTECSEWREETTSEDK 744
>SB_27243| Best HMM Match : DUF1537 (HMM E-Value=5e-27)
Length = 225
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 131 DLLREGAVRRDLPALVAAHAQRAQLPAPFANR--IANRFFSCLVNSRTCCILAAHC 292
DL+ GA DLP + LPA FA R I+ + S S C L+ C
Sbjct: 13 DLINIGAAADDLPLITGGSGVALGLPANFARRGAISGKGVSWSGQSGKCVALSGSC 68
>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 404 CWY-ARKLFRLCIVWNKCLRANTWDPSPRTCXRXCG 300
CW A++LFR +++N+C + N+ + R CG
Sbjct: 330 CWSCAQRLFRFQVLFNQCFKGNSEQNVYLSLTRVCG 365
>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 447 ASSPDLLLDHEPTQMLVCEK--VIPIVHRLEQVSSGEHVGSLAENL 316
ASSPD LL E Q+ +C K IP H L VS E S NL
Sbjct: 675 ASSPDPLLPIEERQVNICAKPAAIPSGHSLPTVSGEE--SSFGNNL 718
>SB_21558| Best HMM Match : TPR_2 (HMM E-Value=0.13)
Length = 351
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -2
Query: 435 DLLLDHEPTQMLVCEKVIPIVHRLEQVSSGEHVGSLAENLLXXXRSQPQCAAKIQQVREF 256
D+LL+H+ + L+ + + + L S H A +L+ + Q + +I+ +E
Sbjct: 90 DMLLEHDQLKKLIHLRALELCQELNLTSGMSHHEKAAGHLMLTEQQQAKSREEIEMWKEK 149
Query: 255 TRQ 247
RQ
Sbjct: 150 QRQ 152
>SB_47262| Best HMM Match : LSPR (HMM E-Value=0.31)
Length = 306
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 336 PRVRPKTLVPDDAQSE*LSRIPAFESVHDQAASPVRKRSIYLRAGRLMNS--LRSSESEH 509
P R L PDD++ E LS P F + + P+ L + RL + L +SEH
Sbjct: 10 PLFRTTYLHPDDSEHEELSATPLFRTTYKH---PIYSEHDELSSTRLFRTAYLHPDDSEH 66
Query: 510 TKVGFT 527
++ T
Sbjct: 67 EELSAT 72
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 336 PRVRPKTLVPDDAQSE*LSRIPAFESVHDQAASPVRKRSIYLRAGRLMNS--LRSSESEH 509
P R L PDD++ E LS P F + + P+ L + RL + L +SEH
Sbjct: 94 PLFRTTYLHPDDSEHEELSATPLFRTTYKH---PIYSEHDELSSTRLFRTAYLHPDDSEH 150
Query: 510 TKVGFT 527
++ T
Sbjct: 151 EELSAT 156
>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
Length = 748
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = -1
Query: 610 RRHLEGLPHIAWGLFVMHFEYIVKHAPCVKPTLVCSDSDDLKEFISRPALKYILRFLTGL 431
+R +EGL + W +F ++ ++ P K T++ S + F+S + +L +
Sbjct: 112 KRPVEGLTNFTWNMFKPLGQFTIRRKPS-KGTMITSAFRKHRTFVS--IIPGLLLLCGDI 168
Query: 430 AA*S*TDSNAGMRESYSDC 374
+ +NAG+R S C
Sbjct: 169 ISQPGPTANAGLRHSSIRC 187
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = -1
Query: 610 RRHLEGLPHIAWGLFVMHFEYIVKHAPCVKPTLVCSDSDDLKEFISRPALKYILRFLTGL 431
+R +EGL + W +F ++ ++ P K T++ S + F+S + +L +
Sbjct: 481 KRPVEGLTNFTWNMFKPLGQFTIRRKPS-KGTMITSAFRKHRTFVS--IIPGLLLLCGDI 537
Query: 430 AA*S*TDSNAGMRESYSDC 374
+ +NAG+R S C
Sbjct: 538 ISQPGPTANAGLRHSSIRC 556
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,679,090
Number of Sequences: 59808
Number of extensions: 442482
Number of successful extensions: 1364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -