Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2012
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   1.4  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    25   3.3  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   3.3  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    24   5.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    24   5.8  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    24   5.8  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   7.6  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 209 EIDNLSQNVSELNDNYPGFYESLVPKELSTQQK 111
           ++ + +Q    + +N P F+  L PK   T++K
Sbjct: 526 QLPSKTQETPSITENKPSFFSQLSPKREETEKK 558


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 10  FLLKIASLSVNDFCNNVIKVISVLLACTSTLS 105
           F L+++SLS +D   + I    VLL+C  +LS
Sbjct: 245 FKLQLSSLSESDLETSAIFEKGVLLSCLDSLS 276


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -1

Query: 233 DNFKN*MTEIDNLSQNVSELNDNYPGFYESLVPKELSTQQK 111
           ++FKN    +D+L    +++N +Y G++  +   ELST+ +
Sbjct: 396 NSFKN----LDSLRDMSTQINKHYTGYFIPVSNNELSTKDE 432


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 107 IFSVAYLIPLVLMIHRSQDNCRLVQTHFDLDYQFPSF 217
           +F+    +P  ++  R Q   R    HF  +Y +PSF
Sbjct: 122 LFASVVYVPSEVLKTRLQLQGRYNNPHFQSNYNYPSF 158


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 4   FRFLLKIASLSVNDFCNNVIKVISVLLACTSTLSN 108
           FR    I +LSV D CNN  K +   +  TS L+N
Sbjct: 781 FREFAAITALSVLDACNNGTKYV---VNSTSKLTN 812


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 193 LRLSISVIQFLKLSFTNLTFF 255
           + ++  VI FL +SFT +TFF
Sbjct: 519 ISITFWVIMFLSVSFTIVTFF 539


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 75   RNYLNDVITKIIYRQARYL 19
            +NY N + T + Y  ARY+
Sbjct: 1377 QNYANSIFTNLTYGGARYI 1395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,204,431
Number of Sequences: 5004
Number of extensions: 21481
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)