Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2012
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 28 1.7
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611... 27 3.0
02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508... 27 3.9
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940... 27 5.2
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 5.2
06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904 26 6.9
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 26 6.9
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985... 26 9.1
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131... 26 9.1
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = -1
Query: 230 NFKN*MTEID---NLSQNVSEL-NDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITL 63
N KN + ID NL+ +++ + N + + L RF+SVL N+ I
Sbjct: 294 NLKNSVVIIDEAHNLADSLTSMYNSKITSSQLNAILSHLEAYLNRFQSVLGAGNRRYIQT 353
Query: 62 MTLLQKSF 39
+T+L +SF
Sbjct: 354 LTVLTRSF 361
>12_02_0117 -
13860418-13860524,13860612-13860810,13860969-13861148,
13861230-13861375,13862185-13862323,13863076-13863153,
13863654-13863722,13863806-13863925,13864792-13864875,
13864961-13865032,13865204-13865345,13866016-13866023
Length = 447
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +1
Query: 61 IKVISVLLACTSTLSNLF 114
I+VI++ L+CT+ LSNLF
Sbjct: 205 IRVINLSLSCTNVLSNLF 222
>02_04_0611 + 24347384-24350015,24350126-24350497,24350561-24350805,
24350997-24351059,24351919-24352422
Length = 1271
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -1
Query: 185 VSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQ 48
V+ + N+P ++ +L ++KRF++ N I L+++LQ
Sbjct: 919 VNFVEKNFPEQIPQIIDAQLQEERKRFQATAKQENGFYICLLSVLQ 964
>10_06_0004 -
9407954-9408007,9408219-9408386,9408441-9408542,
9408710-9408934,9409889-9410047,9411768-9411900,
9412827-9413758,9413842-9413987,9415863-9416082
Length = 712
Score = 26.6 bits (56), Expect = 5.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 210 RHSILEVVLYKSDIFSTCLIF 272
RH I ++ + +D++ TCL+F
Sbjct: 650 RHRIFRILKFTTDMYLTCLVF 670
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 125 LIPLVLMIHRSQDNCRLVQ-THFDLDYQFPSFNS*SCPLQI*HFFNLSNIFALSPVI 292
L+ V+++H + D CR+ Q +D FN+ S + FF L I L+P++
Sbjct: 10 LLAAVVLVHAAADGCRVFQIEEATVDDIQLGFNNGSLTSRQLVFFYLDRIARLNPLL 66
>06_02_0099 - 11730617-11730988,11731423-11731692,11732509-11732904
Length = 345
Score = 26.2 bits (55), Expect = 6.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 191 QNVSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIF 18
Q+V + +Y + S VP+ELS+ + + T ++ L QK F + ++F
Sbjct: 116 QSVHLFHSSYALMWRSKVPEELSSGVHLNKGNIYIGKATPSHVVKLFQKKFKEDFSLF 173
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 239 VKDNFKN*MTEIDNLSQNVSELNDNYPGFYESLV 138
V DNF+ T+I ++ +++ND+Y Y+ +
Sbjct: 221 VLDNFERAKTQIKVETEQETKINDSYQSIYKQFI 254
>05_06_0279 +
26896997-26897457,26898100-26898220,26898310-26898586,
26898735-26898895
Length = 339
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 19 KIASLSVNDFCNNVIKVISVLLACTSTLSNLF 114
+ A+L++N + NN+ K I + CT LSN F
Sbjct: 178 RFANLAINHY-NNIEKNIVKIELCTVLLSNCF 208
>03_06_0014 -
31012116-31012229,31012773-31012985,31013058-31013171,
31013909-31014040,31014624-31014692,31014763-31015017,
31015347-31015520,31016104-31016280,31016999-31017107,
31017343-31017506,31018221-31018517
Length = 605
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 203 DNLSQNVSELNDNYPGFYESLVPKELSTQQKRFE 102
DN + S +ND P YE L+P+++ + K +E
Sbjct: 185 DNKHAHESLMNDEGP--YEELLPEDMVDEDKHYE 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,610,712
Number of Sequences: 37544
Number of extensions: 105864
Number of successful extensions: 269
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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