Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2012
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         27   4.1  
SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)              27   5.4  
SB_21084| Best HMM Match : DEAD (HMM E-Value=2e-22)                    27   5.4  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    26   7.1  
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 26   9.4  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 26   9.4  

>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -1

Query: 236 KDNFKN*MTEIDNLSQNVSELNDNY----PGFYESLVPKELSTQQKRFESVLVHANKTEI 69
           KD  K+   +I+ L +++SELN+       GF  S V K+L  +  R +   + A+  + 
Sbjct: 259 KDTLKDKDLQIERLQRSISELNEKLSYQATGFSRSSVAKDLELEALRQQDEKLRADLIQR 318

Query: 68  T 66
           T
Sbjct: 319 T 319


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +1

Query: 4    FRFLLKIASLSVNDFCNNVIKVISVLLACTSTLSNLFCCVLNSFGTN 144
            FRFLL    L+ ND    +  VI +L A   T SN    VL     N
Sbjct: 989  FRFLLSSGKLTENDL---LASVIDLLFAGVDTTSNTMLWVLYMMSQN 1032


>SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
          Length = 581

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 342 LSDKISKVRDDIIKC----DDMTGDNAKILDRLKKCQICKGQLQELN 214
           + D+ +   DDI+ C    D ++ DN K+LD     Q CK   Q  N
Sbjct: 208 IKDQKAASADDIVNCGVSCDVISMDNGKVLDTEALSQSCKQCQQHPN 254


>SB_21084| Best HMM Match : DEAD (HMM E-Value=2e-22)
          Length = 202

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 176 LNDNYPGFYESLVPKELSTQQKR 108
           + DN+  FY + +P EL+  QKR
Sbjct: 41  IGDNFTNFYNNHLPFELTNAQKR 63


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 336  DKISKVRDDIIKCDDMTGDNAKILDRLKKCQICKGQ-LQELN 214
            DKI  ++++IIK D    ++  I + LKK    K + +++LN
Sbjct: 1853 DKIFVLKEEIIKADSQLAEHKGISESLKKTVSKKTEVIEDLN 1894


>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 432

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 164 YPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFT 36
           + GFY S   +++S  +K +ES+ +  +  E+T    L K+ +
Sbjct: 244 FNGFYSSNSVRDISINRKMYESLAMGNSSEEVTSYLDLVKAMS 286


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = -1

Query: 254 KNVRFVKDNFKN*MTEIDNLSQNVSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKT 75
           K+ + +K  + N +TE+  L Q  S+LN+ Y      +V +E    +K+  +VL   NK 
Sbjct: 207 KDYQRLKHEYVNVLTELQILRQRNSDLNEKY-----DVVSQEADYFRKQHRTVL---NKC 258

Query: 74  EITLMTL--LQKSFTDKL 27
           ++ +     LQ+ + + L
Sbjct: 259 DLLVREAQSLQRKYEESL 276


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 16  LKIASLSVNDFCNNVIKVISVLLACTSTLSNLFCCVLN 129
           LKI  L+ N+  N   K I+  L   STL  L  C  N
Sbjct: 787 LKILDLTKNNIGNEGAKAIANALMTNSTLKKLHLCENN 824


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,337,771
Number of Sequences: 59808
Number of extensions: 144607
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)