Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2012
         (344 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    26   0.34 
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    26   0.34 
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    25   1.0  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   3.2  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    23   4.2  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    22   5.6  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   7.4  

>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 236 KDNFKN*MTEIDNLSQNVSE---LNDNYPGFYESLVPKELSTQQKRFESVLVHANK 78
           KD  K  +  I N  +N+ +   L    PG+   L+P E   Q +++E V+    +
Sbjct: 17  KDFAKEMVDYISNYLENIRDRRVLPTVQPGYLRPLIPDEAPQQPEKWEEVMADVER 72


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 236 KDNFKN*MTEIDNLSQNVSE---LNDNYPGFYESLVPKELSTQQKRFESVLVHANK 78
           KD  K  +  I N  +N+ +   L    PG+   L+P E   Q +++E V+    +
Sbjct: 48  KDFAKEMVDYISNYLENIRDRRVLPTVQPGYLRPLIPDEAPQQPEKWEEVMADVER 103


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 188 NVSELNDNYPGFYESLVPKELSTQQKRFES-VLVHANKTEI 69
           NV ++NDN P F +      L      FES ++V A  +++
Sbjct: 614 NVLDVNDNAPVFVQKRYEVRLKENAFEFESPIVVEARDSDL 654


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 46  FCNNVIKVISVLLACTSTLSNLF 114
           FC +   ++ +L+ C S +S  F
Sbjct: 920 FCRSAFNLLDLLVVCVSLISMFF 942


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 267 LDRLKKCQICKGQLQELNDGN**SKSKCV*TKRQ 166
           +D+ +KC + + QL + N+     KSK    K+Q
Sbjct: 292 VDKFEKCVVKRRQLMKQNEREVVEKSKSCFKKQQ 325


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 65  LMTLLQKSFTDKLAIFN 15
           L+ +LQ  FTD+  IFN
Sbjct: 615 LLRILQSYFTDRELIFN 631


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 221  N*MTEIDNLSQNVSELNDNYPGFYESLVPKELST 120
            N +TE  +  +  S   D+Y   YE L+ K L T
Sbjct: 2158 NYLTESVSYLETDSYGQDSYTPIYEGLISKTLFT 2191


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,792
Number of Sequences: 2352
Number of extensions: 4248
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24505155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)