Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2012
         (344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542-10|AAX88836.1|  486|Caenorhabditis elegans Nuclear hormon...    32   0.096
U41542-9|AAK39150.3|  542|Caenorhabditis elegans Nuclear hormone...    32   0.096
AY305836-1|AAR11981.1|  487|Caenorhabditis elegans nuclear recep...    32   0.096
AF273781-1|AAG15130.1|  508|Caenorhabditis elegans nuclear recep...    32   0.096
AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical ...    27   2.7  
AF125451-1|AAD12822.2|   83|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z29561-3|CAD54153.1|  846|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical pr...    26   6.3  
U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.       26   6.3  
U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    26   8.3  
AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    26   8.3  

>U41542-10|AAX88836.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 35, isoform b protein.
          Length = 486

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 185 VSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIFNRNL 6
           +S + D Y    ESL+  E++ Q  R ++V+      E T  +  + S TD+ A  N  L
Sbjct: 124 MSPVEDEYDQLLESLLKSEMTIQSLR-DTVITQTGNVEYTTKSKNRLSHTDRTATLNDVL 182

Query: 5   K 3
           K
Sbjct: 183 K 183


>U41542-9|AAK39150.3|  542|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 35, isoform a protein.
          Length = 542

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 185 VSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIFNRNL 6
           +S + D Y    ESL+  E++ Q  R ++V+      E T  +  + S TD+ A  N  L
Sbjct: 180 MSPVEDEYDQLLESLLKSEMTIQSLR-DTVITQTGNVEYTTKSKNRLSHTDRTATLNDVL 238

Query: 5   K 3
           K
Sbjct: 239 K 239


>AY305836-1|AAR11981.1|  487|Caenorhabditis elegans nuclear receptor
           NHR-35 protein.
          Length = 487

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 185 VSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIFNRNL 6
           +S + D Y    ESL+  E++ Q  R ++V+      E T  +  + S TD+ A  N  L
Sbjct: 125 MSPVEDEYDQLLESLLKSEMTIQSLR-DTVITQTGNVEYTTKSKNRLSHTDRTATLNDVL 183

Query: 5   K 3
           K
Sbjct: 184 K 184


>AF273781-1|AAG15130.1|  508|Caenorhabditis elegans nuclear receptor
           NHR-35 protein.
          Length = 508

 Score = 32.3 bits (70), Expect = 0.096
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 185 VSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIFNRNL 6
           +S + D Y    ESL+  E++ Q  R ++V+      E T  +  + S TD+ A  N  L
Sbjct: 146 MSPVEDEYDQLLESLLKSEMTIQSLR-DTVITQTGNVEYTTKSKNRLSHTDRTATLNDVL 204

Query: 5   K 3
           K
Sbjct: 205 K 205


>AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical
           protein F13B6.2 protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 71  FLFYWHVRVRFQIFSVAYLIPLVLMIHRSQDNC 169
           F FY  +     +F   Y+ PL++ + +  DNC
Sbjct: 49  FFFYTVLNAALYLFPTLYMKPLLIKLAKVPDNC 81


>AF125451-1|AAD12822.2|   83|Caenorhabditis elegans Hypothetical
           protein Y37E11B.2 protein.
          Length = 83

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 161 PGFYESLVPKELSTQQKRFESVLVHANKTEITL 63
           P    SL P  + +QQ+RF+SVL H +  ++ +
Sbjct: 34  PRSMPSLKPYPMQSQQERFQSVLDHDDMDKVMM 66


>Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 170 DNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIFNRNLK 3
           DN+P   E +  K +  ++    +V   AN  +ITL   +  S T+KLA    N+K
Sbjct: 447 DNFPQIAERISKKLMLIERFGGLAVASLANDLDITLALSMLDSNTEKLAGEGDNIK 502


>Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -1

Query: 170 DNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIFNRNLK 3
           DN+P   E +  K +  ++    +V   AN  +ITL   +  S T+KLA    N+K
Sbjct: 447 DNFPQIAERISKKLMLIERFGGLAVASLANDLDITLALSMLDSNTEKLAGEGDNIK 502


>Z29561-3|CAD54153.1|  846|Caenorhabditis elegans Hypothetical
           protein R10E12.1c protein.
          Length = 846

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 245 RFVKDNFKN*MTEIDNLSQNVSELNDNYPG 156
           + VK+ F++    I+ LS+N SEL  + PG
Sbjct: 514 KMVKEKFESHRQGIELLSKNESELRSSIPG 543


>Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical
           protein R10E12.1b protein.
          Length = 882

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 245 RFVKDNFKN*MTEIDNLSQNVSELNDNYPG 156
           + VK+ F++    I+ LS+N SEL  + PG
Sbjct: 514 KMVKEKFESHRQGIELLSKNESELRSSIPG 543


>Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical
           protein R10E12.1a protein.
          Length = 861

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 245 RFVKDNFKN*MTEIDNLSQNVSELNDNYPG 156
           + VK+ F++    I+ LS+N SEL  + PG
Sbjct: 514 KMVKEKFESHRQGIELLSKNESELRSSIPG 543


>U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.
          Length = 861

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 245 RFVKDNFKN*MTEIDNLSQNVSELNDNYPG 156
           + VK+ F++    I+ LS+N SEL  + PG
Sbjct: 514 KMVKEKFESHRQGIELLSKNESELRSSIPG 543


>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 203 DNLSQNVSELNDNYPGFYESLVPKELSTQQKRFES 99
           + LS+ + EL+  +P     L+  + +TQ+++F+S
Sbjct: 397 EQLSRQIIELSRGFPNNCNELIRLKKNTQEQKFDS 431


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 251 FFNLSNIFALSPVISSHLMISSRTLLILSDN 343
           F NLS +  L  + S H  +S  T+L + DN
Sbjct: 265 FENLSFLTGLETITSKHSYLSKMTMLNIHDN 295


>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = -1

Query: 245 RFVKDNFKN*MTEIDNLSQNVSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEIT 66
           RF  D+  + M E D +   + +   ++    E L   + S +Q R    L+H  K+ I 
Sbjct: 708 RFKSDSGIDQMYE-DKIETLIDQAQKSFNEAREHLEKIDNSVEQNREMMQLIHVAKSNII 766

Query: 65  LMTLLQKSFTDKLAIFN 15
              +L+   TD+  +++
Sbjct: 767 ACRVLKLDLTDRNVVWS 783


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,511,646
Number of Sequences: 27780
Number of extensions: 117481
Number of successful extensions: 381
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)