Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2012
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              24   0.58 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   2.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   2.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   7.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   7.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   7.2  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              20   9.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   9.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   9.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   9.5  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 204 NFRHSILEVVLYKSDIFSTCLI 269
           +FR+ I++V   K  +FS CLI
Sbjct: 46  DFRNGIIDVENEKVQLFSECLI 67


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 206 IDNLSQNVSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKL 27
           ID +  N    N  Y  F ++     L+     F+S +  A +T+    T +QK   DKL
Sbjct: 32  IDEILANDRLRNQYYDCFIDA--GSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKL 89

Query: 26  A 24
           A
Sbjct: 90  A 90


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 206 IDNLSQNVSELNDNYPGFYESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKL 27
           ID +  N    N  Y  F ++     L+     F+S +  A +T+    T +QK   DKL
Sbjct: 32  IDEILANDRLRNQYYDCFIDA--GSCLTPDSVFFKSHITEAFQTQCKKCTEIQKQNLDKL 89

Query: 26  A 24
           A
Sbjct: 90  A 90


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 107 IFSVAYLIPLVLMI 148
           IF  AY+IPL+ +I
Sbjct: 224 IFIWAYVIPLIFII 237


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 72  NYLNDVITKIIY 37
           N+++DV+TK+ Y
Sbjct: 463 NFVSDVVTKLRY 474


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 72  NYLNDVITKIIY 37
           N+++DV+TK+ Y
Sbjct: 431 NFVSDVVTKLRY 442


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 128 IPLVLMIHRSQDNCRLVQTHFDLDY 202
           I +VL+IH      + V T +  DY
Sbjct: 154 IVMVLIIHPGDPRIKSVVTAYKADY 178


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 107 IFSVAYLIPLVLMI 148
           IF  AY+IPL+ +I
Sbjct: 224 IFIWAYVIPLIFII 237


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 204 NFRHSILEVVLYKSDIFSTCLI 269
           +FR   ++V   K  +FS CLI
Sbjct: 46  DFRDGNIDVEDEKVQLFSECLI 67


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 255 KKCQICKGQLQELND 211
           K CQ C G L   ND
Sbjct: 543 KLCQQCVGNLASNND 557



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 300 CDDMTGDNAKILDRLKKCQICKGQLQELNDG 208
           C    G+ A   DR+++   CK   +E   G
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKATNEETYRG 575


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 255 KKCQICKGQLQELND 211
           K CQ C G L   ND
Sbjct: 543 KLCQQCVGNLASNND 557



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 300 CDDMTGDNAKILDRLKKCQICKGQLQELNDG 208
           C    G+ A   DR+++   CK   +E   G
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKATNEETYRG 575


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 255 KKCQICKGQLQELND 211
           K CQ C G L   ND
Sbjct: 543 KLCQQCVGNLASNND 557



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 300 CDDMTGDNAKILDRLKKCQICKGQLQELNDG 208
           C    G+ A   DR+++   CK   +E   G
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKATNEETYRG 575


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,133
Number of Sequences: 438
Number of extensions: 1545
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)