Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2012
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58840.1 68418.m07373 subtilase family protein contains simil...    27   3.4  
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative...    26   7.7  
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ...    26   7.7  
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ...    26   7.7  
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    26   7.7  
At1g80245.2 68414.m09392 expressed protein                             26   7.7  
At1g80245.1 68414.m09391 expressed protein                             26   7.7  

>At5g58840.1 68418.m07373 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]; non-consensus acceptor site TT at exon 6
          Length = 713

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 185 VSELNDNYPGF-YESLVPKELSTQQKRFESVLVHANKTEITLMTLLQKSFTDKLAIFNR 12
           V+ +N+NY  + Y S++P    ++   F+SV+ + N T+    T+L+       AIFN+
Sbjct: 386 VANINENYHDYAYVSILPSSALSKDD-FDSVISYVNSTKSPHGTVLKSE-----AIFNQ 438


>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
           microtubule-associated motor KIF4 , Mus musculus,
           PIR:A54803
          Length = 1294

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -3

Query: 330 ISKVRDDIIKCDDMTGDNAKILDRLKKCQICKGQLQELNDGN 205
           I  V +DI +  + T D++++L R+   +I K ++ +L D N
Sbjct: 109 IPNVMEDIFRRVETTKDSSELLIRVSFIEIFKEEVFDLLDSN 150


>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 265

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 179 ELNDNYPGFYESLVPKELSTQQKRFES 99
           E +D Y G     +P+ELS   KR ES
Sbjct: 18  EEDDEYMGDLSQFIPQELSQTSKRKES 44


>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
           SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
           contains Pfam profiles PF00226: DnaJ domain, PF01556:
           DnaJ C terminal region, PF00684: DnaJ central domain (4
           repeats)
          Length = 517

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 300 CDDMTGDNAKILDRLKKCQICKGQLQELN 214
           CD   G  AK  + +K+C  C G+ + +N
Sbjct: 212 CDGCGGTGAKSSNSIKQCSSCDGKGRVMN 240


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 146 SLVPKELSTQQKRFESVLVHANKTEI 69
           S +PK+     +    VLVH NK EI
Sbjct: 629 SYIPKQKGANYRDMPGVLVHNNKAEI 654


>At1g80245.2 68414.m09392 expressed protein
          Length = 127

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 86  HVRVRFQIFSVAYLIPLVLMIHRSQDNCRLVQTHFD 193
           H R R Q  +   L P V+   R  DNC L++TH D
Sbjct: 68  HARKRVQ--NDTSLAPSVVHQLRLLDNCNLLKTHVD 101


>At1g80245.1 68414.m09391 expressed protein
          Length = 127

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 86  HVRVRFQIFSVAYLIPLVLMIHRSQDNCRLVQTHFD 193
           H R R Q  +   L P V+   R  DNC L++TH D
Sbjct: 68  HARKRVQ--NDTSLAPSVVHQLRLLDNCNLLKTHVD 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,890,752
Number of Sequences: 28952
Number of extensions: 100081
Number of successful extensions: 269
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)