Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2007
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 315 3e-87
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 171 5e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 158 5e-40
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 126 2e-30
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 93 4e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 90 3e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 82 5e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 5e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 30 0.31
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 28 0.93
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 27 2.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 315 bits (774), Expect = 3e-87
Identities = 149/179 (83%), Positives = 157/179 (87%)
Frame = +3
Query: 78 DEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQ 257
+EE+AALV+DN SGMCKAGFAGDDAPR VFPSIVGRPRH G VGMGQKDSYVGDEAQ
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIM--VGMGQKDSYVGDEAQ 59
Query: 258 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 437
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 438 TQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
TQI+FETFN PA Y + S SGRTTGIVLDSGDGV+HTVPIYEGY LPHAI+R
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYA-SGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMR 177
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 171 bits (417), Expect = 5e-44
Identities = 83/172 (48%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Frame = +3
Query: 96 LVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQSKRGIL 275
+ +DN SG KAGFAGDD P+ +FP+ VGR +H+ QKD +VG EAQ+ RG+L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMP--SSIQKDMFVGSEAQNLRGLL 69
Query: 276 TLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 452
++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +
Sbjct: 70 KIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFY 129
Query: 453 ETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAI 608
ET N PA+ P S RTTGIVL+ GDG++H+VPIY+G+ +P AI
Sbjct: 130 ETLNVPAL-SFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 158 bits (384), Expect = 5e-40
Identities = 76/177 (42%), Positives = 114/177 (64%)
Frame = +3
Query: 84 EVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQSK 263
E A +V+DN +G K G+A D+ PR FPSIVGRP + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 264 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 443
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 444 IMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
MFE + +Y + S G ++G+V+DSGDGV+H VP+YE L H + R
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYA-QGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 126 bits (305), Expect = 2e-30
Identities = 73/199 (36%), Positives = 107/199 (53%), Gaps = 28/199 (14%)
Frame = +3
Query: 96 LVVDNXSGMCKAGFAGDDAPRTVFPSIVG--------------RPRHQGGWGWVGMGQK- 230
+++DN +G K G+AG+DAP VFP+++ +P + G + K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 231 -----DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVL 392
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H L
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFL 127
Query: 393 LTEAPLNPKANREKMTQIMFETFNTPAMY---RRHPSPCSXCTPSGRT----TGIVLDSG 551
LTE PLNP NRE +IMFE+FN +Y + + + T S T TG V+DSG
Sbjct: 128 LTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSG 187
Query: 552 DGVSHTVPIYEGYPLPHAI 608
DGV+H +P+ EGY + +I
Sbjct: 188 DGVTHIIPVAEGYVIGSSI 206
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 92.7 bits (220), Expect = 4e-20
Identities = 58/172 (33%), Positives = 86/172 (50%)
Frame = +3
Query: 81 EEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQS 260
+EV+A+V+D S + GF+G+D P+ V PS G G G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE--FSDGRRLFG----EEYI---YKS 59
Query: 261 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 440
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 60 NPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTL 118
Query: 441 QIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPL 596
+ MFE+ PA Y C+ SG+ T ++D G S IY+G+ L
Sbjct: 119 ETMFESLRCPATYLAKQETCA-AFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 89.8 bits (213), Expect = 3e-19
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 2/166 (1%)
Frame = +3
Query: 96 LVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQSKRGIL 275
LV+DN S +AG+ G+ P+ VF ++V R R + + + + VG++ + G
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK------LSRTSTLVGNDTLIEVGSR 80
Query: 276 TL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 452
++ + P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++F
Sbjct: 81 SIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLF 139
Query: 453 ETFNTPAM-YRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEG 587
E +N P++ Y ++GIVL+ G+ SH +P+ G
Sbjct: 140 ELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 82.2 bits (194), Expect = 5e-17
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Frame = +3
Query: 81 EEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQS 260
EE+ +LV+D S + G+AG+++P T+ PS G G ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDVTG--------RNKYVVDELQI 59
Query: 261 KRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R++
Sbjct: 60 HAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQ 119
Query: 435 MTQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
+ + FE + PA Y + C + ++T +++D G + P+ +G + I +
Sbjct: 120 IMEAAFEQLHVPAFYLTKQAVC-VAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFK 178
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.1 bits (87), Expect = 5e-04
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 455
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 456 TFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEG 587
P + P G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAY-EPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 348 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 470
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.9 bits (64), Expect = 0.31
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Frame = +3
Query: 96 LVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQSKRGIL 275
+V+DN + KAGFAG P+ + R + G + ++G+E +
Sbjct: 8 IVLDNGAYHIKAGFAGGKVVE--IPNCLTRSKD---------GNR-LFLGNELANCNDFT 55
Query: 276 TLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQ 443
TL++ H G + +W +W N + P ++ +LLT+ + Q
Sbjct: 56 TLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQ 115
Query: 444 IMFETFNTPAMYRRHPSPCSXCTPSGRT-------TG------IVLDSGDGVSHTVPIYE 584
++FE F A P+ T TG +V+DSG +H +P+ +
Sbjct: 116 LVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVID 175
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 284 FEGQDTSFALCLISYIRVLLSHTDPPPTALMA 189
+EG+DT+ +Y+R++L TD T L A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKATVLAA 105
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 390 LLTEAPLNPKANREKMTQIMFETFNTPAMYRRHPSP 497
+L APL+ + +KM +++FET+N + +P
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYNESDGHENEKNP 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,966
Number of Sequences: 5004
Number of extensions: 64128
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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