Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2007
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 332 1e-91
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 327 4e-90
SB_56| Best HMM Match : Actin (HMM E-Value=0) 326 6e-90
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 325 1e-89
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 310 6e-85
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 168 4e-42
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 2e-39
SB_54| Best HMM Match : Actin (HMM E-Value=0) 120 7e-28
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 109 1e-24
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 86 2e-17
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 80 1e-15
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 56 2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 50 1e-06
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 49 3e-06
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 39 0.003
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 31 0.56
SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6) 29 2.3
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_10147| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 28 6.9
SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 332 bits (817), Expect = 1e-91
Identities = 158/181 (87%), Positives = 164/181 (90%)
Frame = +3
Query: 72 MCDEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDE 251
MCD++VAALVVDN SGMCKAGFAGDDAPR VFPSIVGRPRHQG VGMGQKDSYVGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--VGMGQKDSYVGDE 58
Query: 252 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 431
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 432 KMTQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAIL 611
KMTQIMFETFN+PAMY + S SGRTTGIV+DSGDGV+HTVPIYEGY LPHAIL
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYA-SGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 177
Query: 612 R 614
R
Sbjct: 178 R 178
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 327 bits (804), Expect = 4e-90
Identities = 156/181 (86%), Positives = 163/181 (90%)
Frame = +3
Query: 72 MCDEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDE 251
M D+E+AALVVDN SGMCKAGFAGDDAPR VFPSIVGRPRHQG VGMGQKDSYVGDE
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--VGMGQKDSYVGDE 58
Query: 252 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 431
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 432 KMTQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAIL 611
KMTQIMFETFN+PAMY + S SGRTTGIV+DSGDGV+HTVPIYEGY LPHAI+
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYA-SGRTTGIVMDSGDGVTHTVPIYEGYALPHAII 177
Query: 612 R 614
R
Sbjct: 178 R 178
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 326 bits (802), Expect = 6e-90
Identities = 156/179 (87%), Positives = 162/179 (90%)
Frame = +3
Query: 78 DEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQ 257
++EVAALVVDN SGMCKAGFAGDDAPR VFPSIVGRPRHQG VGMGQKDSYVGDEAQ
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--VGMGQKDSYVGDEAQ 59
Query: 258 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 437
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 119
Query: 438 TQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
TQIMFETFN+PAMY + S SGRTTGIV+DSGDGV+HTVPIYEGY LPHAILR
Sbjct: 120 TQIMFETFNSPAMYVAIQAVLSLYA-SGRTTGIVMDSGDGVTHTVPIYEGYALPHAILR 177
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 325 bits (799), Expect = 1e-89
Identities = 155/179 (86%), Positives = 162/179 (90%)
Frame = +3
Query: 78 DEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQ 257
+++VAALVVDN SGMCKAGFAGDDAPR VFPSIVGRPRHQG VGMGQKDSYVGDEAQ
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--VGMGQKDSYVGDEAQ 59
Query: 258 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 437
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 119
Query: 438 TQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
TQIMFETFN+PAMY + S SGRTTGIV+DSGDGV+HTVPIYEGY LPHAILR
Sbjct: 120 TQIMFETFNSPAMYVAIQAVLSLYA-SGRTTGIVMDSGDGVTHTVPIYEGYALPHAILR 177
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 310 bits (761), Expect = 6e-85
Identities = 147/171 (85%), Positives = 154/171 (90%)
Frame = +3
Query: 72 MCDEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDE 251
M D+++AALV+DN SGMCKAGFAGDDAPR VFPSIVGRPRHQG VGMGQKDSYVGDE
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--VGMGQKDSYVGDE 58
Query: 252 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 431
AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 118
Query: 432 KMTQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYE 584
KMTQIMFETFN+PAMY + S SGRTTGIV+DSGDGVSHTVPIYE
Sbjct: 119 KMTQIMFETFNSPAMYVAIQAVLSLYA-SGRTTGIVMDSGDGVSHTVPIYE 168
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 168 bits (408), Expect = 4e-42
Identities = 79/91 (86%), Positives = 82/91 (90%)
Frame = +3
Query: 78 DEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQ 257
D++VAALV+DN SGMCKAGFAGDDAPR VFPSIVGRPRHQG VGMGQKDSYVGDEAQ
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM--VGMGQKDSYVGDEAQ 59
Query: 258 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 350
SKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 60 SKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 88.6 bits (210), Expect = 3e-18
Identities = 43/64 (67%), Positives = 50/64 (78%)
Frame = +3
Query: 423 NREKMTQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPH 602
N + M +IMFETFN+PAMY + S SGRTTGIV+DSGDGV+HTVPIYEGY LPH
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYA-SGRTTGIVMDSGDGVTHTVPIYEGYALPH 136
Query: 603 AILR 614
AI+R
Sbjct: 137 AIIR 140
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 159 bits (385), Expect = 2e-39
Identities = 76/176 (43%), Positives = 108/176 (61%), Gaps = 1/176 (0%)
Frame = +3
Query: 90 AALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQSKRG 269
+ +V DN +G K G+AG + P +FPS+VGRP + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 270 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 446
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 447 MFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
MFE + +Y + + G TG+V+DSGDGV+H P+YEG+ LPH R
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYA-QGLLTGVVIDSGDGVTHICPVYEGFALPHLTRR 181
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 120 bits (290), Expect = 7e-28
Identities = 58/95 (61%), Positives = 69/95 (72%)
Frame = +3
Query: 330 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYRRHPSPCSXC 509
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MY + +
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 510 TPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
SGRTTG V D GDGVSHTVP+Y+GY LPHA R
Sbjct: 2189 A-SGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQR 2222
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +3
Query: 96 LVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQ 197
+V+DN SG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 109 bits (263), Expect = 1e-24
Identities = 48/79 (60%), Positives = 63/79 (79%)
Frame = +3
Query: 378 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDG 557
+HPVLLTEAPLNP+ NREK ++ FETFN PA++ + S +GRTTG+VLD+GDG
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYA-TGRTTGVVLDAGDG 184
Query: 558 VSHTVPIYEGYPLPHAILR 614
VSH+VPIYEG+ +PH+I+R
Sbjct: 185 VSHSVPIYEGFAMPHSIMR 203
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 86.2 bits (204), Expect = 2e-17
Identities = 40/109 (36%), Positives = 67/109 (61%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 467
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 468 PAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
PA + S + +GR+ G+V+DSG + VP+++GY L AI+R
Sbjct: 63 PAFFLCKNSVLT-AFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVR 110
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 80.2 bits (189), Expect = 1e-15
Identities = 39/57 (68%), Positives = 43/57 (75%)
Frame = +3
Query: 444 IMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAILR 614
IMFE FN+PA+Y + S SGRTTG+V DSGDGVSH VPIYEGY LPHAILR
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYA-SGRTTGVVFDSGDGVSHNVPIYEGYALPHAILR 56
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +3
Query: 216 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 395
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 528 TGIVLDSGDGVSHTVPI 578
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = +3
Query: 81 EEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQ 197
E LV+D S M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 50.4 bits (115), Expect = 1e-06
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 7/184 (3%)
Frame = +3
Query: 84 EVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKDSYVGDEAQSK 263
++A LV+D + K GFA + APR++ P+ + + + + ++ ++GD+ +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE---------RRKLFIGDQIEEC 281
Query: 264 RGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 437
+ L Y P + G + NWD ++IW +TF E + M
Sbjct: 282 KDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAM 321
Query: 438 TQIMFETFNTPAMYRRHPS-----PCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPH 602
+I+FE +N A+ R + C S +V+D+G +H VP++ G +
Sbjct: 322 DEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKK 381
Query: 603 AILR 614
A+ R
Sbjct: 382 AVRR 385
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 66 FKMCDEEVAALVVDNXSGMCKAGFAGDDAPRTVFPSIVGRPRHQGGWGWVGMGQKD-SYV 242
FK+ A+V+DN G+ K GFAGD PR + P++VG P+ + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 243 GDEAQSKRGILTL 281
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 528 TGIVLDSGDGVSHTVPIYEGYPLPHAI 608
TG V+DSGDGV+H +P+ EGY + I
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCI 88
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -1
Query: 194 MAGPSHDRGKHCARSIISCEAGLAHTGXIVYYQRGNFFV 78
MA + D G++ + SI+S E GLAHTG I+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 279 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 431
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 31.5 bits (68), Expect = 0.56
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Frame = -2
Query: 568 VWE--TPSPESSTIPVVRPD-----GVQXEHGLGWRRYMAGVLNVSNMIWVIFSLLALGL 410
VWE T P + T+P + D V + W R VL N ++++F +LGL
Sbjct: 3 VWELSTTGPTNRTVPTIIIDYAICTEVLYKTSGSWIRICDIVLLAPNAMFMVFLFYSLGL 62
Query: 409 RGASVSRTGCSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCAS 248
A + T C T +L + ++++SQ+ + C + R +LL AS
Sbjct: 63 AHAKLVGTRCPIVKTIYTLLLLYGIHYTLNSQVFAV-CVVSVARCFASMLLTAS 115
>SB_17926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1078
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Frame = +3
Query: 363 RVAPEEHPVLLTEAPLNPKANREKMTQIMFE----TFNTPAM----YRRHPSPCSXCTPS 518
R AP +P L+ P + NRE++ + + TFNT M + P+PC+
Sbjct: 287 RQAPPPNPSTLS-FPAT-ETNREQLQEWLLNHYSSTFNTVPMRCGQWPTIPNPCATSLAR 344
Query: 519 GRTTGIVLDSGDGVSHTVPIYEGYPLPHAIL 611
G TG+ D GV VP+ E H ++
Sbjct: 345 GSKTGLDHDVALGVLEPVPVGEPVTWCHRMI 375
>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
Length = 383
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Frame = +3
Query: 276 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-----PVLLTEAPLNPKANREKMT 440
+L Y + HG+ + + + + LR A H P+L T A+ ++T
Sbjct: 223 SLGYQVAHGLYARHNTLTRTRAPSRSCSLRTAQHPHTGTKSPMLSTHGTTPSLAHGYQVT 282
Query: 441 QIMFETFNTPAMYRRHPSPCSXCTPSGRTTGIVLDSGDGVSHTVPIYEGYPLPHAI 608
++ NT R PCS T TG T + GY + H +
Sbjct: 283 HALYARHNTLTRTRVPSRPCSLRTARHPHTGTKSPMVSTHGTTPSLAHGYQVTHGL 338
>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1498
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -2
Query: 511 VQXEHGLGWRRYMAGVLNVSNMIWVIFSLLALGLRGASVSRTGCSSGATRSSL*K-V*CQ 335
V+ LG + Y+ + N ++ ++FSL A+GL A ++ T + G + + + V Q
Sbjct: 1077 VKKYRALGRKEYLKDLWNYLEILVLLFSLSAIGLYFARLALTKYTIGNMKETPDRFVSFQ 1136
Query: 334 IFSMSSQLVTIPCSM 290
+ + VT CS+
Sbjct: 1137 YVAFLDEWVTATCSL 1151
>SB_10147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 473 HVPSPSKPVLSLYAVRSYHRYRAGLRRRCLPHRAHLRGIPTPPRHPA 613
H P P + + + RYR R R L HR IP PP +PA
Sbjct: 50 HRPQPLSILATNPTGCAASRYRQ--RLRALIHRTSAHAIPNPPFYPA 94
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = +2
Query: 407 PQPQGQQREDDPDHVRNIQHARHVPSPSKPVLSLYAVRSYHRYRAGLRRRCLPHRAH 577
P R D H + + H + V +L + S HR + R+C P+R +
Sbjct: 738 PNTDSAHRTDSTQHRQCAPYRLHPAQTVRTVQTLPSTDSAHRTHSTQHRQCAPYRLY 794
>SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.5 bits (58), Expect = 9.1
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 270 ILTLKYPIEHGIVTN--WDDMEKIWHHTFYNELRVAPEEHPVLLTE--APLNPKANREKM 437
++T +Y I GI ++ +D + I HH + R ++ LTE L+ +KM
Sbjct: 174 VITERYLIVLGIRSDLLFDHVIPIKHHVIIHLSRSYYKQEHRELTEMRTKLSQCRGLDKM 233
Query: 438 TQIMFETFNTPAMYRRHPSPCSXC 509
T+ F + PSPCS C
Sbjct: 234 TR---SNFTVRTFFAFFPSPCSKC 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,854,142
Number of Sequences: 59808
Number of extensions: 597942
Number of successful extensions: 1844
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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