Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2007
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   1.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.1  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   5.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.6  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 117 GMCKAGFAGDDAPRT 161
           GMCK G +GD   +T
Sbjct: 130 GMCKEGISGDKTTKT 144


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +2

Query: 377 GTPRPAY*GSPQPQGQQREDDPDHVRNIQHARHVPSPSKP 496
           G  RP Y   P+P   +   +P+         ++P P  P
Sbjct: 99  GNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 138



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/40 (25%), Positives = 16/40 (40%)
 Frame = +2

Query: 377 GTPRPAY*GSPQPQGQQREDDPDHVRNIQHARHVPSPSKP 496
           G  RP Y   P+P   +   +P+         ++P P  P
Sbjct: 125 GNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPP 164


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 360  LRVAPEEHPVLLTEAPLNPKANREKM 437
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 401 GSPQPQGQQREDDPDHVRNIQHARHVPSPS 490
           G P+ +   ++DD     NI+  +  P+ S
Sbjct: 79  GKPKEETDDKDDDESDNENIKSQKEFPNSS 108


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 493 LGWRRYMAGVLNVSNMIWVIFSLLALGLRGAS 398
           +G    M   LN+SN+ W+        L GA+
Sbjct: 22  IGLHNNMCTSLNLSNLFWLFVGTYFPSLIGAN 53


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 272 PDPQIPHRTRNRH 310
           PD  +P +T NRH
Sbjct: 462 PDNFLPEKTANRH 474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,667
Number of Sequences: 438
Number of extensions: 5201
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)