Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2004
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.2  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   6.3  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   6.3  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   6.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 419 QPLSTWYLPSLYV*SPS---RNSHPSVVLLSVT 330
           Q  ++W+ PS+Y  SP    R+ +PS + +S +
Sbjct: 183 QVAASWHTPSMYPLSPGAGFRSPYPSALPISTS 215


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 419 QPLSTWYLPSLYV*SPS---RNSHPSVVLLSVT 330
           Q  ++W+ PS+Y  SP    R+ +PS + +S +
Sbjct: 75  QVAASWHTPSMYPLSPGAGFRSPYPSALPISTS 107


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 199 TIFHTTAILH 170
           T++HTTA LH
Sbjct: 155 TLYHTTAYLH 164


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 199 TIFHTTAILH 170
           T++HTTA LH
Sbjct: 155 TLYHTTAYLH 164


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 199 TIFHTTAILH 170
           T++HTTA LH
Sbjct: 155 TLYHTTAYLH 164


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 165 RKVFRRKKGKQTHS 124
           R  F RK+G+QT++
Sbjct: 237 RSQFERKRGRQTYT 250


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 165 RKVFRRKKGKQTHS 124
           R  F RK+G+QT++
Sbjct: 239 RSQFERKRGRQTYT 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,767
Number of Sequences: 336
Number of extensions: 2908
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)