Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2004
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 156 2e-39
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 62 5e-11
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.077
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 25 6.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 6.7
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p... 25 8.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 156 bits (379), Expect = 2e-39
Identities = 70/98 (71%), Positives = 83/98 (84%)
Frame = -3
Query: 582 LCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 403
+ L PGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E +PK +KSGDA I +
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKM 402
Query: 402 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKACQ 289
VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKA +
Sbjct: 403 VPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440
Score = 30.7 bits (66), Expect = 0.18
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 610 GAADFTAQVIVLNHP 566
G A FTAQVI+LNHP
Sbjct: 334 GCASFTAQVIILNHP 348
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 156 bits (379), Expect = 2e-39
Identities = 70/98 (71%), Positives = 83/98 (84%)
Frame = -3
Query: 582 LCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 403
+ L PGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E +PK +KSGDA I +
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKM 402
Query: 402 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKACQ 289
VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKA +
Sbjct: 403 VPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440
Score = 30.7 bits (66), Expect = 0.18
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 610 GAADFTAQVIVLNHP 566
G A FTAQVI+LNHP
Sbjct: 334 GCASFTAQVIILNHP 348
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 156 bits (379), Expect = 2e-39
Identities = 70/98 (71%), Positives = 83/98 (84%)
Frame = -3
Query: 582 LCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 403
+ L PGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E +PK +KSGDA I +
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKM 402
Query: 402 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKACQ 289
VPSKP+CVE+F ++ PLGRFAVRDMRQTVAVGVIKA +
Sbjct: 403 VPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVE 440
Score = 30.7 bits (66), Expect = 0.18
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 610 GAADFTAQVIVLNHP 566
G A FTAQVI+LNHP
Sbjct: 334 GCASFTAQVIILNHP 348
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 62.5 bits (145), Expect = 5e-11
Identities = 31/92 (33%), Positives = 51/92 (55%)
Frame = -3
Query: 576 LTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 397
L +P ++ GY+ V+ HTA FA++ K+D+ T + ++ P G I L
Sbjct: 567 LELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELET 625
Query: 396 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 301
P+C+E F+++ +GRF +RD TVAVG +
Sbjct: 626 QTPVCMERFEDYQYMGRFTLRDQGTTVAVGKV 657
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.077
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 390 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 298
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 413 MAASPDLMDFGLTSVDLPVRRSTFS 487
++ +PDL D L+SVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 592 AQVIVLNHPWSNLKRL 545
A++++L+H WSNL RL
Sbjct: 329 AELLLLDHQWSNLIRL 344
>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 191 SYNCDTSFTERCFEGKKGNK 132
++NCD F + +GK+ NK
Sbjct: 207 AHNCDNVFADAAVDGKRTNK 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,274
Number of Sequences: 5004
Number of extensions: 48647
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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