Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2004
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 145 3e-35
03_01_0547 + 4093196-4093657,4094267-4095148 145 3e-35
03_01_0544 + 4082528-4082989,4083585-4084466 145 3e-35
03_01_0543 + 4076981-4077442,4078145-4079026 145 3e-35
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 54 7e-08
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 54 7e-08
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 50 2e-06
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 48 6e-06
04_02_0030 + 8819935-8820000,8820059-8820363,8820636-8820937,882... 28 6.9
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 6.9
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 9.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 145 bits (351), Expect = 3e-35
Identities = 63/90 (70%), Positives = 76/90 (84%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIK 298
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIK 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 613 KGAADFTAQVIVLNHP 566
K AA FT+QVI++NHP
Sbjct: 323 KEAASFTSQVIIMNHP 338
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 145 bits (351), Expect = 3e-35
Identities = 63/90 (70%), Positives = 76/90 (84%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIK 298
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIK 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 613 KGAADFTAQVIVLNHP 566
K AA FT+QVI++NHP
Sbjct: 323 KEAASFTSQVIIMNHP 338
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 145 bits (351), Expect = 3e-35
Identities = 63/90 (70%), Positives = 76/90 (84%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIK 298
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIK 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 613 KGAADFTAQVIVLNHP 566
K AA FT+QVI++NHP
Sbjct: 323 KEAASFTSQVIIMNHP 338
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 145 bits (351), Expect = 3e-35
Identities = 63/90 (70%), Positives = 76/90 (84%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIK 298
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIK 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2
Query: 613 KGAADFTAQVIVLNHP 566
K AA FT+QVI++NHP
Sbjct: 323 KEAASFTSQVIIMNHP 338
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 54.4 bits (125), Expect = 7e-08
Identities = 32/103 (31%), Positives = 51/103 (49%)
Frame = -3
Query: 609 VLQILQLKSLCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 430
V L+L+ L L + I GY H A + +I +D+ GK ++ P+ +K
Sbjct: 570 VSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLK 628
Query: 429 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 301
S A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 629 SKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 54.4 bits (125), Expect = 7e-08
Identities = 32/103 (31%), Positives = 51/103 (49%)
Frame = -3
Query: 609 VLQILQLKSLCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 430
V L+L+ L L + I GY H A + +I +D+ GK ++ P+ +K
Sbjct: 570 VSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLK 628
Query: 429 SGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 301
S A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 629 SKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = -3
Query: 513 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 334
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 333 DMRQTVAVGVIKACQLQ 283
T+AVG++ + Q
Sbjct: 637 SQGNTIAVGIVSRVREQ 653
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = -3
Query: 594 QLKSLCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS------- 436
QL+ L L + GY VL H+ C+ ++ E++D + K + K
Sbjct: 322 QLQILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLF 381
Query: 435 IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 334
+K+G + + + +C+E+F +FP LGRF +R
Sbjct: 382 VKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>04_02_0030 +
8819935-8820000,8820059-8820363,8820636-8820937,
8821938-8822014,8822519-8822869
Length = 366
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 253 CRKGHQGQEVARAVKTQSTIFHTTAILH 170
C GH G V + V+T ++ TT I+H
Sbjct: 150 CNTGHSGWIVRKPVRTSCSLTPTTGIVH 177
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 296 ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRR 475
A+ P TV + T ++ RG K +GL G KLT S L LT ++ +R
Sbjct: 282 AIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLSTALSPIALTCMEPKKKR 341
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 299 LMTPTATVCLMSRTAKRPRGGNSWKDST 382
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,178,534
Number of Sequences: 37544
Number of extensions: 326259
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -