Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2004
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 154 5e-38
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 5e-06
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.003
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 31 1.0
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.3
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14) 29 3.1
SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10) 29 4.1
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13) 29 4.1
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 5.4
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 7.1
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 7.1
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 7.1
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 7.1
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 7.1
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 7.1
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 154 bits (374), Expect = 5e-38
Identities = 67/91 (73%), Positives = 81/91 (89%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK E NPK IK+GDAA+V ++PSKP
Sbjct: 209 PGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKP 268
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKA 295
+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+
Sbjct: 269 MCVETFTEFPPLGRFAVRDMKQTVAVGVIKS 299
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -3
Query: 480 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 331
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -3
Query: 417 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 301
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = -3
Query: 516 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 495 EIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 355
EI R TG++TE+N ++ SG+ I +V + C+ Q + P
Sbjct: 257 EINASHSRETGQTTEIN--ALHSGEPGIPGVVAAYQACIRQVQLYGP 301
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 428 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQS 532
DL +F G+T++ LP ST + NLQ W +WQS
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
Length = 189
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -3
Query: 522 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 343
T H+A + E ++ + T K V+ S + + +L S +EFP LG+
Sbjct: 103 TVHLAALYIEHMTEIIQNTEKPPSVSDASSPGTTSDLDDLETDFTFSDFSLEEFPELGKL 162
Query: 342 AVR 334
A+R
Sbjct: 163 ALR 165
>SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)
Length = 98
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 430 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 540
L G W F R +V+F+ D+ ++ G + +HW
Sbjct: 8 LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 44
>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 430 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 540
L G W F R +V+F+ D+ ++ G + +HW
Sbjct: 250 LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 286
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 495 LQICRQCGQCGNPTLV---CNRLRFDQGW 572
L +C QCGQC +P V N++ +GW
Sbjct: 767 LIVCSQCGQCFHPYCVGVKVNKMILSKGW 795
>SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)
Length = 168
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 430 LDGFWVDFSRFTSTTVNFFFDFCKFAGNVGSVAIQHW 540
L G W F R +V+F+ D+ ++ G + +HW
Sbjct: 8 LGGGWTVFQRRQDGSVDFWRDWAEYKNGFGDLQGEHW 44
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 305 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 400
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -3
Query: 555 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 388
+N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 411 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 322
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,795
Number of Sequences: 59808
Number of extensions: 380858
Number of successful extensions: 1052
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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