Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2004
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 164 5e-41
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 164 5e-41
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 164 5e-41
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 44 7e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 44 7e-05
U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical pr... 28 4.7
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 4.7
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 4.7
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 4.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 164 bits (398), Expect = 5e-41
Identities = 75/97 (77%), Positives = 83/97 (85%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 316 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 375
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKACQLQGG 277
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+ + G
Sbjct: 376 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDG 412
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 164 bits (398), Expect = 5e-41
Identities = 75/97 (77%), Positives = 83/97 (85%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 409
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKACQLQGG 277
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+ + G
Sbjct: 410 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDG 446
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 164 bits (398), Expect = 5e-41
Identities = 75/97 (77%), Positives = 83/97 (85%)
Frame = -3
Query: 567 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 388
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 409
Query: 387 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKACQLQGG 277
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+ + G
Sbjct: 410 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDG 446
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/86 (31%), Positives = 48/86 (55%)
Frame = -3
Query: 558 ISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCV 379
I++GY+ VL +A + +D++TG+ K +K + I+ L +P +
Sbjct: 444 IASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVL 501
Query: 378 ESFQEFPPLGRFAVRDMRQTVAVGVI 301
E F+E+P LGRF +RD +T+A+G +
Sbjct: 502 EPFKEYPYLGRFTLRDEGKTIAIGKV 527
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/99 (22%), Positives = 45/99 (45%)
Frame = -3
Query: 594 QLKSLCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 415
+++ + I I G L H+ + C F + +++ G+ + P+ I G +A
Sbjct: 488 EVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASA 547
Query: 414 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 298
+V + + +E+F LGR R T+A G+++
Sbjct: 548 VVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVE 586
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/99 (22%), Positives = 45/99 (45%)
Frame = -3
Query: 594 QLKSLCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 415
+++ + I I G L H+ + C F + +++ G+ + P+ I G +A
Sbjct: 506 EVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASA 565
Query: 414 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 298
+V + + +E+F LGR R T+A G+++
Sbjct: 566 VVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVE 604
>U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical
protein C24G7.1 protein.
Length = 608
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = -2
Query: 619 HLKGAADFTAQVIVLNHPWSNLKRLHTSVGLPHCPHCLQICRN 491
+LK F V NH SN LP C C Q C N
Sbjct: 390 NLKECTPFETLACVNNHNGSNNATGKLEFKLPRCAQCAQQCNN 432
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 534 LDCHTAHIACKFAEIKEKVDRRTGKSTE 451
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 534 LDCHTAHIACKFAEIKEKVDRRTGKSTE 451
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 534 LDCHTAHIACKFAEIKEKVDRRTGKSTE 451
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,069
Number of Sequences: 27780
Number of extensions: 279494
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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