Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2004
(623 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 179 2e-47
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 179 2e-47
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 116 2e-28
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 23 3.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.2
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 4.2
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 4.2
AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein. 21 9.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.8
AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein. 21 9.8
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 9.8
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 9.8
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 179 bits (435), Expect = 2e-47
Identities = 83/96 (86%), Positives = 89/96 (92%)
Frame = -3
Query: 582 LCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 403
+ L PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVML 404
Query: 402 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKA 295
P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+
Sbjct: 405 QPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKS 440
Score = 35.9 bits (79), Expect = 3e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -2
Query: 613 KGAADFTAQVIVLNHP 566
+GAADFTAQVIVLNHP
Sbjct: 335 RGAADFTAQVIVLNHP 350
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 179 bits (435), Expect = 2e-47
Identities = 83/96 (86%), Positives = 88/96 (91%)
Frame = -3
Query: 582 LCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 403
+ L PGQISNGYTPVLDCHTAHIACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV L
Sbjct: 345 IVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVML 404
Query: 402 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKA 295
VPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKA
Sbjct: 405 VPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKA 440
Score = 37.1 bits (82), Expect = 1e-04
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -2
Query: 613 KGAADFTAQVIVLNHP 566
KGAADFTAQVIVLNHP
Sbjct: 335 KGAADFTAQVIVLNHP 350
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 116 bits (279), Expect = 2e-28
Identities = 54/64 (84%), Positives = 57/64 (89%)
Frame = -3
Query: 582 LCLTIPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNL 403
+ L PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L
Sbjct: 56 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVML 115
Query: 402 VPSK 391
P+K
Sbjct: 116 QPTK 119
Score = 35.9 bits (79), Expect = 3e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -2
Query: 613 KGAADFTAQVIVLNHP 566
+GAADFTAQVIVLNHP
Sbjct: 46 RGAADFTAQVIVLNHP 61
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 22.6 bits (46), Expect = 3.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -2
Query: 574 NHPWSNLKRLHTSVGLPHCPHC 509
+H RLHT HC HC
Sbjct: 22 DHHLKTHMRLHTGEKPYHCSHC 43
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 211 KTQSTIFHTTAILHSPKGVSKEKRETNSFL 122
K Q T FH T I++ EKR N L
Sbjct: 34 KLQPTYFHHTYIIYESLCGRHEKRLLNELL 63
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 211 KTQSTIFHTTAILHSPKGVSKEKRETNSFL 122
K Q T FH T I++ EKR N L
Sbjct: 34 KLQPTYFHHTYIIYESLCGRHEKRLLNELL 63
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 22.2 bits (45), Expect = 4.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Frame = -3
Query: 591 LKSLCLTIPGQISNGYTPVLDC 526
++ LC PG++ Y P C
Sbjct: 402 VRILCACCPGRVRRRYQPAFRC 423
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 134 CFPFFLRNTFR*MKYRSCMKN 196
C FF R+ + ++YR C KN
Sbjct: 87 CKGFFRRSIQQKIQYRPCTKN 107
>AY703618-1|AAU12614.1| 136|Apis mellifera wingless protein.
Length = 136
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 447 NPKSIKSGDAAIVNLVPSKPLC 382
NP+ G +V L PS P C
Sbjct: 66 NPEHKPPGPKDLVYLEPSPPFC 87
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 9.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 568 PWSNLKRLHTSVGLPHCP 515
P S +R HT+ G+P P
Sbjct: 1067 PMSEERRQHTAEGVPEQP 1084
>AY222546-1|AAP69221.1| 135|Apis mellifera wingless protein.
Length = 135
Score = 21.0 bits (42), Expect = 9.8
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 447 NPKSIKSGDAAIVNLVPSKPLC 382
NP+ G +V L PS P C
Sbjct: 67 NPEHKPPGPKDLVYLEPSPPFC 88
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 165 RKVFRRKKGKQTHS 124
R F RK+G+QT++
Sbjct: 265 RSQFERKRGRQTYT 278
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -1
Query: 425 EMQPLSTWYLPSL 387
+ P+ WY+PSL
Sbjct: 589 DKNPVQLWYVPSL 601
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,459
Number of Sequences: 438
Number of extensions: 3151
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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