Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2003
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7B5T0 Cluster: Putative uncharacterized protein; n=1; ...    36   1.0  
UniRef50_Q2QXK4 Cluster: Expressed protein; n=1; Oryza sativa (j...    34   3.2  
UniRef50_Q0IQ14 Cluster: Os12g0153600 protein; n=3; Oryza sativa...    34   3.2  
UniRef50_UPI00006CC8FF Cluster: B-box zinc finger family protein...    33   7.3  
UniRef50_Q245Q3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_A7B5T0 Cluster: Putative uncharacterized protein; n=1;
            Ruminococcus gnavus ATCC 29149|Rep: Putative
            uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 2043

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -2

Query: 507  YVINYDDKNGTVSSVCKVTTSPGGSYRKKKISKEILDSPKGQILKPKTI 361
            +++N+  K G    + K  T P G+ RKK    EIL    GQ L+ KTI
Sbjct: 1878 HIVNHPQKGGVTVEITKEVTGPLGN-RKKPFDMEILYWEDGQKLRSKTI 1925


>UniRef50_Q2QXK4 Cluster: Expressed protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Expressed protein - Oryza
           sativa subsp. japonica (Rice)
          Length = 249

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 499 NNILTSPWRFGSVSF*IYILMFVFYLY 579
           N +   PW FGSV+F + +L+F++YL+
Sbjct: 171 NEVFKIPWIFGSVAFCVILLIFLWYLW 197


>UniRef50_Q0IQ14 Cluster: Os12g0153600 protein; n=3; Oryza
           sativa|Rep: Os12g0153600 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 413

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 499 NNILTSPWRFGSVSF*IYILMFVFYLY 579
           N +   PW FGSV+F + +L+F++YL+
Sbjct: 335 NEVFKIPWIFGSVAFCVILLIFLWYLW 361


>UniRef50_UPI00006CC8FF Cluster: B-box zinc finger family protein;
            n=1; Tetrahymena thermophila SB210|Rep: B-box zinc finger
            family protein - Tetrahymena thermophila SB210
          Length = 1938

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 510  EYVINYDDKNGTVSSVCKVTTSPGGSYRKKKISKEILDSPKGQILKPKTINKI 352
            EY++NY ++   ++S      S    Y+ ++I+   L+S K Q+L P T + I
Sbjct: 1509 EYLVNYSERQQKLNSNRIPKKSSPSHYQNQQINASSLNSLKQQVLSPTTASSI 1561


>UniRef50_Q245Q3 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1217

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -1

Query: 277  MEIFQCNFQIIQN*RVEREKLIKIKNVKTKVYI 179
            MEI +  FQI++N R++  KLIK K +K K ++
Sbjct: 936  MEIREDEFQILENYRIQPMKLIKPKIIKNKQHV 968


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,298,232
Number of Sequences: 1657284
Number of extensions: 10026056
Number of successful extensions: 22059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22042
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)