Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2003
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   3.8  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.8  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   5.1  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   5.1  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   8.9  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   8.9  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   8.9  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   8.9  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    25   8.9  

>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 519 LEIWICFVLNLYPYVRFLFVQISF 590
           +E+W  F L + PY+   F+ ++F
Sbjct: 182 VEVWSIFYLEILPYIEATFLPVTF 205


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 326 MPLMNALTQI*PAFI*NGNISVQLPD-HPKLTSRKRKADKNKKCENESLYRKVLPDIVS 153
           MPL++      P F   G+ + QL D   + TSRK+ A+  +   + S++ + L D+ S
Sbjct: 52  MPLVHFFLNGFPVFTVIGDATAQLGDPSGRSTSRKQMAETTRTANSNSIHNQ-LKDLSS 109


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 506 YSRRLGDLDLFRFEFISLCSFFICTDFIS 592
           Y+R +G L L +  FI LC  F+    +S
Sbjct: 68  YNRTIGKLQLNKLTFIDLCDCFLNPTLLS 96


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 72  SRNFILTNQFDWSIQPSTLTYL 7
           S+N  +T++ +W+IQ S + YL
Sbjct: 841 SKNSFMTSRVNWAIQSSAVDYL 862


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 486 KNGTVSSVCKVTTSPGGSYRKKKISKEILDSPK 388
           K+GT++S+ +    PG S   K+    +L  PK
Sbjct: 534 KDGTITSIVQSLMDPGSSPASKQTESYLLLDPK 566


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 296 IFVLERSLVACIQLYFRSAILFIVLGFSICPFGLSKISFEI 418
           IF L   L +C+ L+       + LGF+   +G    SF++
Sbjct: 322 IFTLISILPSCVILFLYPRKRLLALGFASASWGFFLFSFQV 362


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 471 SSVCKVTTSPGGSYRKKKI--SKEILDSPKG 385
           S    +++SP  S RKKK+  S E+ +SP G
Sbjct: 23  SQAVGLSSSPSSSIRKKKVNFSSELENSPGG 53


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 296  IFVLERSLVACIQLYFRSAILFIVLGFSICPFGLSKISFEIFFFL*LPPGLVVTLQT 466
            +F    SL+   Q YF  A L  +L  S  P G  +I    FF+  +   L   L T
Sbjct: 1401 LFSWSHSLLVDGQPYFADAALSFLLICSSSPAGAEQIVMNGFFYSIMESPLSTALST 1457


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 274 PF*MKAGYICVRAFISGM 327
           P  +K GY+C+ AF++ M
Sbjct: 252 PILLKYGYVCITAFVARM 269


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 512 RRLGDLDLFRFEFISLCSFFICTDFISYTNCV 607
           RRL   D F  E +S  + F C D I Y   +
Sbjct: 139 RRLKRADQFGKELVSFTNAFDCNDHIFYLEAI 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,748
Number of Sequences: 5004
Number of extensions: 46156
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)