Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2003
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0344 + 2647044-2647238,2647452-2647553,2647789-2647911,264...    34   0.11 

>12_01_0344 +
           2647044-2647238,2647452-2647553,2647789-2647911,
           2648066-2648183,2649022-2649347
          Length = 287

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 499 NNILTSPWRFGSVSF*IYILMFVFYLY 579
           N +   PW FGSV+F + +L+F++YL+
Sbjct: 209 NEVFKIPWIFGSVAFCVILLIFLWYLW 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,042
Number of Sequences: 37544
Number of extensions: 246023
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)