Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2003
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37139| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_11059| Best HMM Match : KID (HMM E-Value=0.046)                     27   9.4  

>SB_37139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 278 NGNISVQLPDHPKLTSRKRKADKNKKCENESLYRKV 171
           NGN +  LP+    T   RKA KN+K ++  ++ ++
Sbjct: 3   NGNHTYGLPNRYGSTRLLRKAVKNRKAQSTDIFERI 38


>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 485 KMEQCPRFVKLQPAQGVVIERKRSQKKS 402
           ++E+C   VKL+  +GV+ + K  QK S
Sbjct: 769 EIEKCEILVKLEKKEGVIAKMKTQQKSS 796


>SB_11059| Best HMM Match : KID (HMM E-Value=0.046)
          Length = 296

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 485 KMEQCPRFVKLQPAQGVVIERKRSQKKS 402
           ++E+C   VKL+  +GV+ + K  QK S
Sbjct: 238 EIEKCEILVKLEQKEGVIAKMKTQQKSS 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,478,094
Number of Sequences: 59808
Number of extensions: 310524
Number of successful extensions: 2874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2874
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)