Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2003
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ...    27   8.2  

>Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical
           protein K08F4.4 protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 22/92 (23%), Positives = 42/92 (45%)
 Frame = +2

Query: 335 LYFRSAILFIVLGFSICPFGLSKISFEIFFFL*LPPGLVVTLQTEDTVPFLSS*LITYSR 514
           L   S +L +VLGF I PF  S  +  +  F   P  + + +     +P + S +I+   
Sbjct: 11  LTIESVVLGVVLGFVIRPFNPSNDTISLIGF---PGEIFMQIVEMMILPLIMSSVISALA 67

Query: 515 RLGDLDLFRFEFISLCSFFICTDFISYTNCVL 610
           ++   D  R   +++  + I T   ++T  +L
Sbjct: 68  QVRARDARRIGIVTIIYYMITTFLATFTGIIL 99


>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
            T01H8.5d protein.
          Length = 1931

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 233  SRKRKADKNKKCENES 186
            SR+RKA KN+KC+ E+
Sbjct: 1086 SRRRKAKKNEKCDRET 1101


>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
            T01H8.5c protein.
          Length = 1971

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 233  SRKRKADKNKKCENES 186
            SR+RKA KN+KC+ E+
Sbjct: 1126 SRRRKAKKNEKCDRET 1141


>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5a protein.
          Length = 2032

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 233  SRKRKADKNKKCENES 186
            SR+RKA KN+KC+ E+
Sbjct: 1187 SRRRKAKKNEKCDRET 1202


>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
            protein T01H8.5d protein.
          Length = 1931

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 233  SRKRKADKNKKCENES 186
            SR+RKA KN+KC+ E+
Sbjct: 1086 SRRRKAKKNEKCDRET 1101


>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
            T01H8.5c protein.
          Length = 1971

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 233  SRKRKADKNKKCENES 186
            SR+RKA KN+KC+ E+
Sbjct: 1126 SRRRKAKKNEKCDRET 1141


>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5a protein.
          Length = 2032

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 233  SRKRKADKNKKCENES 186
            SR+RKA KN+KC+ E+
Sbjct: 1187 SRRRKAKKNEKCDRET 1202


>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1971

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 233  SRKRKADKNKKCENES 186
            SR+RKA KN+KC+ E+
Sbjct: 1126 SRRRKAKKNEKCDRET 1141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,846
Number of Sequences: 27780
Number of extensions: 250560
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)