Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2003
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 36  SNQIGLLK*SCEIIFLILFKYTPYG 110
           S +I + K +  I FL +  +TPYG
Sbjct: 267 SAEIRIAKAAITICFLYVLSWTPYG 291


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 534 CFVLNLY-PYVRFLFVQISFRIPIVFWIH 617
           C  LN+Y P  R      S  +P++FWIH
Sbjct: 105 CLYLNVYVPADR----TPSQSLPVIFWIH 129


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 534 CFVLNLY-PYVRFLFVQISFRIPIVFWIH 617
           C  LN+Y P  R      S  +P++FWIH
Sbjct: 105 CLYLNVYVPADR----TPSQSLPVIFWIH 129


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 503 LLTMMTKMEQCPRFVK 456
           LL ++   E CPR++K
Sbjct: 464 LLKLLQDREYCPRYIK 479


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/35 (22%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 619 KWIQ--NTIGIRNEICTNKKRT*GYKFKTKQIQIS 521
           KW +  N++G+ NE+   + +  G++ +  +I ++
Sbjct: 169 KWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLT 203


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/35 (22%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 619 KWIQ--NTIGIRNEICTNKKRT*GYKFKTKQIQIS 521
           KW +  N++G+ NE+   + +  G++ +  +I ++
Sbjct: 108 KWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISLT 142


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 242 LDDLEVALKYFHFK*RPAIFVLERSLVACIQLYFRS 349
           LD+L   LK+ + + R   F+ E      + L++RS
Sbjct: 100 LDNLHEYLKFSYPRMRAPSFICENETRQGLTLHYRS 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,913
Number of Sequences: 438
Number of extensions: 3404
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)