Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2002
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...   118   5e-28
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   4.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.4  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   8.4  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score =  118 bits (285), Expect = 5e-28
 Identities = 62/125 (49%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
 Frame = +2

Query: 2   QEARYFNSTPLHPRKCIHILTKILYLLNHRGGEELTTQEATDIFFATTKLFQSKDVVLRR 181
           Q+AR FNS+ + PRK   +L+KI YL+    GE    ++AT++FF  TKLFQ KD  LR+
Sbjct: 25  QDARAFNSSSISPRKSRRLLSKIAYLIYT--GEHFQEKQATELFFGITKLFQHKDPSLRQ 82

Query: 182 LVYLCIKELSPMAQDVIIVTSSLTKD-MTGKDDEYRPAAIRALCSITDSTMLQAIERYMK 358
            VY+ IKELS +A+DVI++TSS+ KD  TG++  YRP AIR+L  + D+  + AIER + 
Sbjct: 83  FVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRSLIRVIDANTVPAIERILT 142

Query: 359 QAIVD 373
             IVD
Sbjct: 143 TGIVD 147


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 379 SCSKICRTGLRFASVSPVPDLVRRWINESTG 471
           SC  I +TG + AS S    L+R W N  TG
Sbjct: 179 SCLGISKTGSKIASSSTNGTLIRIW-NSETG 208


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -3

Query: 279 SSSLPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTTSFD*NSFVVAKNISVASCVVNS 100
           S+S+P+ S      T  +S +I  +S     +   ++TSF   S     N++ +S  V++
Sbjct: 636 STSIPLTSTNRTSTTFTSSTSISTSSS----STATSSTSFASESSSFYSNVTTSSSTVST 691

Query: 99  SPP 91
            PP
Sbjct: 692 PPP 694


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +2

Query: 56  ILTKILYLLNHRGGEELTTQEATDIFFATTKLFQS---KDVVL------RRLVYLCIKEL 208
           ILTK+ YL+++     L   +AT    A    ++S   + V L       R++Y C++EL
Sbjct: 530 ILTKLGYLIDNPWNNSLDRAKATGQLLADMLCYRSLGVRPVTLVGYSLGARVIYYCLREL 589

Query: 209 SPMAQDVII 235
               +  II
Sbjct: 590 EKKKEFSII 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,551
Number of Sequences: 5004
Number of extensions: 49345
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)