Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2002
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 166 1e-41
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 153 1e-37
08_02_0707 - 20212190-20214592 31 0.53
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 30 1.6
11_04_0414 + 17386806-17387936 29 2.8
06_03_0307 + 19433172-19433606 28 4.9
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849... 28 6.5
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039... 28 6.5
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 28 6.5
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 28 6.5
01_06_0673 + 31089846-31090132,31090258-31090453 28 6.5
01_01_1150 + 9161058-9162722,9162837-9162920,9163095-9163199,916... 27 8.6
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 166 bits (404), Expect = 1e-41
Identities = 93/181 (51%), Positives = 110/181 (60%)
Frame = +2
Query: 2 QEARYFNSTPLHPRKCIHILTKILYLLNHRGGEELTTQEATDIFFATTKLFQSKDVVLRR 181
QEAR F+ L RKC ++TK+LYLLN GE T EAT++FFA TKLFQSKD LRR
Sbjct: 30 QEARAFHDPQLDARKCSQVITKLLYLLNQ--GETFTKVEATEVFFAVTKLFQSKDAGLRR 87
Query: 182 LVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQ 361
LVYL IKELSP + +VIIVTSSL KDM K D YR AIR LC I D T+L IERY+KQ
Sbjct: 88 LVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTLLTQIERYLKQ 147
Query: 362 AIVDKNPXXXXXXXXXXXXXXXPYRI*CVAG*MKAQEAMTSDHVMGSYHALAVVAGARRN 541
AIVDKNP + QEA+ S + +H LA++ R+N
Sbjct: 148 AIVDKNPVVASAALVSGIHLLQANPEIVKRWSNEVQEAVQSRFALVQFHGLALLHQIRQN 207
Query: 542 D 544
D
Sbjct: 208 D 208
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 153 bits (370), Expect = 1e-37
Identities = 94/198 (47%), Positives = 113/198 (57%), Gaps = 17/198 (8%)
Frame = +2
Query: 2 QEARYFNSTPLHPRKCIHILTKILYLLNHRGGEELTTQEATDIFFATTKLFQSKDVVLRR 181
QEAR F+ L R+C ++TK+LYLLN G+ T EAT++FFATTKLFQSKD LRR
Sbjct: 32 QEARVFHDPQLDARRCCQVITKLLYLLNQ--GDTFTKVEATEVFFATTKLFQSKDAGLRR 89
Query: 182 LVYLCIKELSPMAQD-----------------VIIVTSSLTKDMTGKDDEYRPAAIRALC 310
+VYL IKELSP A + VIIVTSSL KDM K D YR AIR LC
Sbjct: 90 MVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMNSKTDMYRANAIRVLC 149
Query: 311 SITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXPYRI*CVAG*MKAQEAMTSDH 490
I DST+L IERY+KQAIVDKNP + QEA+ S
Sbjct: 150 RIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRWSNEVQEAVQSRA 209
Query: 491 VMGSYHALAVVAGARRND 544
+ +HALA++ R+ND
Sbjct: 210 ALVQFHALALLHQIRQND 227
>08_02_0707 - 20212190-20214592
Length = 800
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -2
Query: 415 QSGDQCGRSYCRILINNSLFHVPLNSLQHCTVCDATQSSNGGRSVLIVFTRHVLRK*RSH 236
QSGD + I + ++ +PLNS+ T C S NGG L H + R H
Sbjct: 599 QSGDHAHQDISNISSDPAILEIPLNSIH--THCSEAHSCNGG---LQSSENHNKSRNRHH 653
Query: 235 NDH 227
DH
Sbjct: 654 IDH 656
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -1
Query: 587 GFRASFVMSFTVEINRCVLPQQQQPRHGKNPSHDLKSWPPVLSFIQRRTKSGTGLTDAK 411
GF A+ ++F +E V+ + + R G+ P W PV + + R K+G +TD++
Sbjct: 67 GFGAAKTVTFALEEEEEVMETRGRGRRGRRPR---VMWSPVAAKTRGRQKAGEVVTDSE 122
>11_04_0414 + 17386806-17387936
Length = 376
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 179 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 316
R+VY+C + S++ K +T DE+ PAA A SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228
>06_03_0307 + 19433172-19433606
Length = 144
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 31 PASEKMHPYFDENTLF--TKP*GGGRINHAGGYGY 129
P E +H D + LF T GGGR GGYGY
Sbjct: 107 PNLEDLHELRDFSDLFYPTSAGGGGRRVDGGGYGY 141
>12_02_0752 +
22784052-22784288,22784531-22784704,22784799-22784930,
22785062-22785439
Length = 306
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 89 RGGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTG 268
RGGE+L ++ DIF + + KD +++ ++ P+ Q + ++ TG
Sbjct: 24 RGGEDLISRLPDDIFTSIITILPGKDAARTQML---SRQWRPLWQSAPLNLEAMVDSRTG 80
Query: 269 KDDE 280
K +E
Sbjct: 81 KLEE 84
>07_03_1193 -
24702135-24702421,24702835-24703160,24703240-24703910,
24704342-24704421,24704515-24704572
Length = 473
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 426 ADRCKAETSAADLTAGFLSTIACFMYLSIACSIVLSVMLHKARMAAGRY-SSSLPVMSFV 250
ADR + + + LT S+ A + +S C++ +V ++ A +Y S + SF
Sbjct: 189 ADRRRKTQALSKLTTPSSSSPAPPLMMSCLCAVTWNVTCTYSQHLASKYPSCCVSFSSFY 248
Query: 249 SEEVTMITSCAIGLNS 202
++ + CA G ++
Sbjct: 249 NDTIVPCAKCACGCDA 264
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 358 FHVPLNSLQHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 224
FHV +HC + + ++SS GG+S + +F+RH R S + +
Sbjct: 122 FHV---CTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +1
Query: 406 LRFASVSPVPDLVRRWINESTGGHDFRSC---DGFLPCLGCCCWGKTQRLISTVKL 564
L+ +++ P V W+ + G R C GF C CW KT + +T L
Sbjct: 555 LKIEAIADTPSFVFLWVGDGVGLEQGRQCLKKWGFRRCED-VCWVKTNKKSATPSL 609
>01_06_0673 + 31089846-31090132,31090258-31090453
Length = 160
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 509 HGKNPSHDLK--SWPPVLSFIQRRTKSGTGLTDAKRRPVRQILLQDSYQQ 366
HG PS D++ WP + +RRT SG L +R + +YQQ
Sbjct: 64 HGLGPSRDVELLHWPISQALRERRTSSGCPLLRYTKRVWTLLASWVAYQQ 113
>01_01_1150 +
9161058-9162722,9162837-9162920,9163095-9163199,
9163310-9163418,9163956-9164107,9164210-9164356
Length = 753
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +1
Query: 406 LRFASVSPVPDLVRRWINESTGGHDFRSC---DGFLPCLGCCCWGKTQRLISTVKL 564
L+ +++ P V W+ + G R C GF C CW KT + +T L
Sbjct: 552 LKIEAIADTPSFVFLWVGDGVGLEQGRQCLKKWGFRRCED-VCWVKTNKKNATPSL 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,514
Number of Sequences: 37544
Number of extensions: 352341
Number of successful extensions: 963
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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