Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2002
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   3e-31
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)                   29   2.2  
SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)                 27   8.7  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  132 bits (318), Expect = 3e-31
 Identities = 81/181 (44%), Positives = 105/181 (58%)
 Frame = +2

Query: 2   QEARYFNSTPLHPRKCIHILTKILYLLNHRGGEELTTQEATDIFFATTKLFQSKDVVLRR 181
           QEAR FN TP++ RKC                          I   T  L+    ++LRR
Sbjct: 29  QEARVFNETPINVRKC--------------------------IHILTKILYLINQLMLRR 62

Query: 182 LVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQ 361
           +VYL IKEL+ +A+DVIIVTSSLTKDMTGK+D +R +AIRALC ITD+TMLQ IERY+KQ
Sbjct: 63  MVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASAIRALCRITDNTMLQGIERYLKQ 122

Query: 362 AIVDKNPXXXXXXXXXXXXXXXPYRI*CVAG*MKAQEAMTSDHVMGSYHALAVVAGARRN 541
           A+VDKNP               P          +AQEA++SD+ M  YHAL ++   +++
Sbjct: 123 AVVDKNPSVSSAALVSSLHLLKPNFDVVKRWVNEAQEAVSSDNTMVQYHALGLLYHIKQS 182

Query: 542 D 544
           D
Sbjct: 183 D 183


>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
          Length = 604

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -2

Query: 325 TVCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHILCHRTQLFN 197
           TVCD     N  R +++   + +      HN H   HR   FN
Sbjct: 48  TVCDRHGQLNVSRVLIVFMVKKIATGFHQHNGHTSFHRCHAFN 90


>SB_8759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 536 VLPQQQQPRHGKNP---SHDLKSWPPVLSFIQRRTKSGTGLTDA 414
           V PQ+++    ++P    H LKS PP  SF +   K   G TD+
Sbjct: 151 VYPQRREHSPNRSPIMAPHQLKSPPPYNSFHRSSWKGSQGSTDS 194


>SB_43607| Best HMM Match : INSIG (HMM E-Value=9.3e-09)
          Length = 544

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 97  GRINHAGGYGYIFCHYETVSVEGRCVTPLSLPMH*RVESY 216
           G I+ +G +  I C  +TVS++ R V  L    H RVE +
Sbjct: 221 GTISSSGEWLLIDCLIKTVSLDSRVVRVLMRTRHSRVEGH 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,254,320
Number of Sequences: 59808
Number of extensions: 399678
Number of successful extensions: 1069
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)