Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2002
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga...   167   5e-42
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    36   0.027
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    29   2.4  
At3g17330.1 68416.m02215 expressed protein contains Pfam profile...    28   5.4  
At3g09220.1 68416.m01096 laccase family protein / diphenol oxida...    27   7.2  
At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domai...    27   9.5  
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    27   9.5  

>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative
           similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
           coat protein) (Gamma-2 COP) {Homo sapiens}; contains
           Pfam profile: PF01602 Adaptin N terminal region
          Length = 886

 Score =  167 bits (406), Expect = 5e-42
 Identities = 91/181 (50%), Positives = 111/181 (61%)
 Frame = +2

Query: 2   QEARYFNSTPLHPRKCIHILTKILYLLNHRGGEELTTQEATDIFFATTKLFQSKDVVLRR 181
           QEAR FN   + PR+C  ++TK+LYLLN   GE  T  EAT++FF+ TKLFQSKD  LRR
Sbjct: 31  QEARVFNDPQVDPRRCSQVITKLLYLLNQ--GESFTKVEATEVFFSVTKLFQSKDTGLRR 88

Query: 182 LVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQ 361
           +VYL IKELSP + +VIIVTSSL KDM  K D YR  AIR LC I D T+L  IERY+KQ
Sbjct: 89  MVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMYRANAIRVLCRIIDGTLLTQIERYLKQ 148

Query: 362 AIVDKNPXXXXXXXXXXXXXXXPYRI*CVAG*MKAQEAMTSDHVMGSYHALAVVAGARRN 541
           AIVDKNP                          + QE + S   +  +HALA++   R+N
Sbjct: 149 AIVDKNPVVSSAALVSGLHLLKTNPEIVKRWSNEVQEGIQSRSALVQFHALALLHQIRQN 208

Query: 542 D 544
           D
Sbjct: 209 D 209


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +2

Query: 116 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSS-LTKDMTGKDDEYRPA 292
           + + +F        + D+VL+++ YL +   +    D+ ++T + L +D   +D   R  
Sbjct: 60  DVSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDPMIRGL 119

Query: 293 AIRALCSITDSTMLQAIERYMKQAIVDKN 379
           A+R+LCS+    +++ +   +   + D N
Sbjct: 120 ALRSLCSLRVPNLVEYLVGPLGSGLKDNN 148


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 101 ELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVII-VTSSLTKDMTGKDD 277
           E+   +A+  +    K+    +++L+R  YL +        D+II + +++ KD+   + 
Sbjct: 77  EMLGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSDNY 136

Query: 278 EYRPAAIRALCSITDSTMLQAI 343
               AA+ A+C + +   + A+
Sbjct: 137 LVVCAALNAICRLINEETIPAV 158


>At3g17330.1 68416.m02215 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 595

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 62  TKILYLLNHRGGEELTTQEATDIFFATTKLFQS 160
           TK++ L N  G E+  TQEATD    +T  F S
Sbjct: 479 TKVVQLKNSDGDEKSNTQEATDDSTPSTLKFGS 511


>At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], laccase GB:CAA74105 [Populus
           balsamifera subsp. trichocarpa]; contains Pfam profile:
           Multicopper oxidases
          Length = 567

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 270 LPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTTSFD*NSFVVAKNISVASCV 109
           +PV  +V EE  M+ +  +GL +     T  + + S   +SFV+ K +S+   V
Sbjct: 350 VPVPRYVDEE--MLVTIGLGLEACADNTTCPKFSASMSNHSFVLPKKLSILEAV 401


>At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 428

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 188 YLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRAL 307
           Y C ++   MA++ ++ +  +T+D  GK+   R A++R L
Sbjct: 387 YSCAEQWRAMAEEALLASGRVTRD--GKERSRRRASLRRL 424


>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 68  ILYL-LNHRGGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD 226
           I+YL + +R GEE+   + T   F T       D +  ++   CI +L   AQ+
Sbjct: 233 IVYLPMFYRFGEEMRPVKLTTKVFGTGYAAAKNDFLFEKVYSFCILDLDSRAQE 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,807
Number of Sequences: 28952
Number of extensions: 269976
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)