Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1996
(430 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 208 5e-53
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 83 2e-15
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 82 4e-15
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 80 2e-14
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 68 1e-10
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 56 3e-07
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 52 7e-06
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 39 0.038
UniRef50_Q9A8X4 Cluster: Gluconolactonase; n=1; Caulobacter vibr... 37 0.15
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 35 0.62
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 34 1.4
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 33 3.3
UniRef50_Q3E226 Cluster: Ribosomal protein S6; n=2; Chloroflexus... 31 7.7
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 208 bits (507), Expect = 5e-53
Identities = 101/112 (90%), Positives = 101/112 (90%)
Frame = -1
Query: 337 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGT 158
STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIG KLTVVVKQIGGEKNGGT
Sbjct: 25 STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGT 84
Query: 157 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGRHA 2
RTVPLKRRKSFYPTQEKIRASSGGRPFSKHV RIRPNLKIGTVCILLAGRHA
Sbjct: 85 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHA 136
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 83.0 bits (196), Expect = 2e-15
Identities = 45/109 (41%), Positives = 61/109 (55%)
Frame = -1
Query: 331 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRT 152
K P N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 19 KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
Query: 151 VPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGRH 5
V LK+ K+ YPT+ ++ FS+H R NL GTV ILLAGRH
Sbjct: 79 VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRH 127
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 82.2 bits (194), Expect = 4e-15
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Frame = -1
Query: 322 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTR 155
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 154 TVPLKRRKSFYPTQEKIR--ASSGGRPFSKHVPRIRPNLKIGTVCILLAGRH 5
V L++ +YPT++ R S G +PFS+HV ++R ++ GT+ I+L GRH
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRH 157
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 80.2 bits (189), Expect = 2e-14
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = -1
Query: 325 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVP 146
P+N+ L GV FS+SKMFHK+ +K K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 145 LKRRKSFYPTQE--KIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGRH 5
LK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H
Sbjct: 85 LKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPH 133
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 67.7 bits (158), Expect = 1e-10
Identities = 40/106 (37%), Positives = 57/106 (53%)
Frame = -1
Query: 322 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPL 143
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 142 KRRKSFYPTQEKIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGRH 5
+R +YPT E +R R + ++R ++ GTV ILLAG H
Sbjct: 70 QRESRYYPT-EDVRRRLANRK-KPGMAKLRSSITPGTVLILLAGAH 113
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 56.0 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = -1
Query: 199 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRPNLKIGTVCIL 20
V+ K+IGG+KNGGTR V ++ FYP + + +K+ P+IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 19 LAG 11
LAG
Sbjct: 104 LAG 106
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 51.6 bits (118), Expect = 7e-06
Identities = 26/65 (40%), Positives = 38/65 (58%)
Frame = -1
Query: 205 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRPNLKIGTVC 26
+ ++ K IGG KNGG R VP K+ +YP +K + R ++RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDK-KTPVPSRKNVHKPTKLRPSIKSGTIV 78
Query: 25 ILLAG 11
ILLAG
Sbjct: 79 ILLAG 83
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 39.1 bits (87), Expect = 0.038
Identities = 29/106 (27%), Positives = 48/106 (45%)
Frame = -1
Query: 322 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPL 143
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 142 KRRKSFYPTQEKIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGRH 5
++ K + + + + S P KH + N TV I++ G+H
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAV-CNSTPETVLIIITGQH 147
>UniRef50_Q9A8X4 Cluster: Gluconolactonase; n=1; Caulobacter
vibrioides|Rep: Gluconolactonase - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 347
Score = 37.1 bits (82), Expect = 0.15
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 26 ANSSYLQVGSDPGYMLAEWTATRGSTDFLL-SGVEGLPT 139
AN SYL PG ++ W A G TDFL SG +G PT
Sbjct: 70 ANGSYLLFSDVPGNVMHRWDAKGGKTDFLRPSGYDGPPT 108
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 35.1 bits (77), Expect = 0.62
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = -1
Query: 202 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVPRIRPNLKIG 35
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 34 TVCILLAGR 8
T+ ILLAGR
Sbjct: 62 TILILLAGR 70
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 33.9 bits (74), Expect = 1.4
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -1
Query: 148 PLKRRKSFYPTQE---KIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGRH 5
P R Y TQ+ K+R + FS HV +IR +++ GTV ILLAG H
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPH 104
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 32.7 bits (71), Expect = 3.3
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 172 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRPNLK 41
K R LK SF P + + ASS GRP K R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q3E226 Cluster: Ribosomal protein S6; n=2;
Chloroflexus|Rep: Ribosomal protein S6 - Chloroflexus
aurantiacus J-10-fl
Length = 145
Score = 31.5 bits (68), Expect = 7.7
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -1
Query: 193 VKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSK 71
V+Q+GG+ N +++ P RRK YP +E + + R F++
Sbjct: 45 VEQLGGKINTVSQSSPWGRRKLAYPIREYVTGEASRRKFTE 85
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,967,659
Number of Sequences: 1657284
Number of extensions: 7799168
Number of successful extensions: 19166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19159
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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