Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1996
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496...    29   2.1  
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    28   3.7  
01_02_0044 - 10559637-10560509,10562849-10563295                       27   4.9  
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    27   6.4  

>06_02_0200 -
           12946139-12946282,12947636-12947842,12949506-12949629,
           12950167-12950369,12950922-12951620,12951723-12951784,
           12952395-12952404,12954905-12957631
          Length = 1391

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 53  SDPGYMLAEWTATRGSTDFLLSGVEGLPTFEGYCSG 160
           +D G +L  W    G+ + +++G     TFE +C G
Sbjct: 641 NDSGSVLYIWDLKTGARERIITGTSSQSTFEHFCRG 676


>08_02_1540 +
           27694565-27694579,27696364-27696447,27696599-27696731,
           27696840-27696951,27697530-27697629,27697810-27697937,
           27698046-27698115,27698548-27698636,27698719-27698764,
           27698854-27698924,27699002-27699075,27699341-27699433,
           27699539-27699572,27699704-27699789,27702147-27702223,
           27702445-27702533,27702630-27702813,27703068-27703249,
           27703962-27704064,27704159-27704490,27704577-27705018,
           27705749-27705846,27706988-27707081,27707666-27707787,
           27708025-27708078,27708185-27708304,27708595-27708799,
           27708889-27709059,27709155-27709310,27709375-27709431,
           27709474-27709580,27709708-27709798,27709931-27710072,
           27710149-27710305,27710400-27710516,27710596-27710722,
           27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 182 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFLWWP 84
           W+  E   Q+++P   ++  L  H+G+  C LWWP
Sbjct: 86  WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120


>01_02_0044 - 10559637-10560509,10562849-10563295
          Length = 439

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 274 SWIWRNASLRCPDHSS*VFS*IFS*SPHLQVRQQAWPA 387
           +W  R  +LR P+ +S V    F+ + HL     AWPA
Sbjct: 258 TWQARTRALRLPEPTSRVNLCFFANTRHLMAGAAAWPA 295


>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -1

Query: 172 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGR 8
           KNGGT     K        FYP  + K RA S  +    +  ++R  +  GTV ILLAGR
Sbjct: 31  KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87

Query: 7   H 5
           +
Sbjct: 88  Y 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,168
Number of Sequences: 37544
Number of extensions: 240315
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)