Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1996
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    30   0.81 
Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z93394-5|CAB61035.1|  447|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical...    27   5.7  
AL117203-23|CAB61044.1|  447|Caenorhabditis elegans Hypothetical...    27   5.7  
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 322 RNYDLGNGVMRFSKSKMFHKKAKYK 248
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z93394-6|CAB61034.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 175 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRP 50
           E +GGT+  P KR+K        +RA+    P S++ P + P
Sbjct: 453 ETSGGTKGKPRKRKKDDVTVAPMLRAAPSA-PNSQNAPLLAP 493


>Z93394-5|CAB61035.1|  447|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1a protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 175 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRP 50
           E +GGT+  P KR+K        +RA+    P S++ P + P
Sbjct: 134 ETSGGTKGKPRKRKKDDVTVAPMLRAAPSA-PNSQNAPLLAP 174


>AL117203-24|CAB61043.1|  766|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1b protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 175 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRP 50
           E +GGT+  P KR+K        +RA+    P S++ P + P
Sbjct: 453 ETSGGTKGKPRKRKKDDVTVAPMLRAAPSA-PNSQNAPLLAP 493


>AL117203-23|CAB61044.1|  447|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1a protein.
          Length = 447

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 175 EKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVPRIRP 50
           E +GGT+  P KR+K        +RA+    P S++ P + P
Sbjct: 134 ETSGGTKGKPRKRKKDDVTVAPMLRAAPSA-PNSQNAPLLAP 174


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 127 FYPTQEKIRASSGGRPFSKHVPRIRPNLKIGTVCILLAGRHA 2
           FYPT+   +A S G P +       PN ++  V    A RHA
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHA 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,827,325
Number of Sequences: 27780
Number of extensions: 183958
Number of successful extensions: 376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)