Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1992
         (667 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7MW05 Cluster: Helicase, SNF2/RAD54 family; n=2; Bacte...    36   0.88 
UniRef50_Q554N4 Cluster: SAP DNA-binding domain-containing prote...    33   8.2  

>UniRef50_Q7MW05 Cluster: Helicase, SNF2/RAD54 family; n=2;
           Bacteroidales|Rep: Helicase, SNF2/RAD54 family -
           Porphyromonas gingivalis (Bacteroides gingivalis)
          Length = 1160

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -1

Query: 583 LEELDLDLFIFNLAMLNFILMIIHDSH-LQNSHTDQHMSLE 464
           LEELD   FI  L   N+ L++I +SH L+N+HT  + SL+
Sbjct: 384 LEELDSGEFIEPLPCANYGLILIDESHRLRNNHTQMYQSLD 424


>UniRef50_Q554N4 Cluster: SAP DNA-binding domain-containing protein;
           n=3; Dictyostelium discoideum|Rep: SAP DNA-binding
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 943

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 31  DNDVKCKDKLEKHTNSNSMHLKQQFSFERLKL 126
           DN++K + KL K  ++ + HLK  F   RLKL
Sbjct: 185 DNEIKTRIKLFKKFDAETQHLKNTFDLNRLKL 216


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 501,811,344
Number of Sequences: 1657284
Number of extensions: 8228765
Number of successful extensions: 18094
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18090
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)