Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1992
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    31   0.20 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.4  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -2

Query: 408 VSTRYDVHYVCWLATLTALMNIYGDRNSMCIHLQIVFKRNCNLATRFYNISFIWTYFKF 232
           +S R+ +H+V +L   + + +IYG+ +       ++ KR     T  Y I  +    KF
Sbjct: 148 ISLRFVLHFVSFLYNSSFISHIYGNYDVFSTLYTVILKRKFGFETAVYAIGLLSACDKF 206


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 333  RNSMCIHLQIVFKRNCNLATRFYNISFIWTYFKFW 229
            RNS+ + L I +    N+  + Y +SF + +  FW
Sbjct: 1300 RNSIFLILSICY--TINICVKVYGLSFYYFFHSFW 1332


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 589 SALEELDLDLFIFNLAMLNFILMIIHDSHLQNSHTDQHMSLEHQNACSFSH 437
           + L+E +L L   NL +L     ++HD    N++   +++ +     SF H
Sbjct: 244 ACLDEFELGLHSRNLDLLRKFSHVLHDFSGPNAYVSMYLAKQTDFVRSFFH 294


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 324  MCIHLQIVFKRNCNLATRFYNISFIWTYFKFW 229
            + +H +  +KR   + + F+  + IWT+  FW
Sbjct: 1078 LLVHGRWDYKRMSQMISFFFYKNVIWTFILFW 1109


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 133 FFLTLTSQTKIAVLGALNCYLC 68
           FFLTL+ +  I VL  +  YLC
Sbjct: 703 FFLTLSIRDPIIVLSTMRPYLC 724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,201
Number of Sequences: 5004
Number of extensions: 38716
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)