Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1992
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    30   1.3  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    28   5.2  
Z81534-5|CAB04348.2|  694|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z47074-2|CAA87377.2|  694|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 465 STRMPVHSPICNVHRL*MFVSTRYDVHYVCWLATLTALMNIYGDRNSM 322
           ST+ P HS I ++  +       Y     CWL  +  ++ I+  R+SM
Sbjct: 285 STQAPEHSAIPSISMIRKMERIFYSSESSCWLIVVLVMLTIFAYRSSM 332


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 318 IHLQIVFKRNCNLATRFYNISFIWTYFKFWQF 223
           ++LQI  K  C+  + F  ISF   + KFW F
Sbjct: 404 LNLQIGKKTFCSKKSIFVEISFFHKFLKFWIF 435


>Z81534-5|CAB04348.2|  694|Caenorhabditis elegans Hypothetical
           protein F37H8.2 protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 376 LAGNANSVNEYIWRPQLYVHTFTNRF*TKLQFS 278
           L GNAN   EY  R Q+    F   F  KL FS
Sbjct: 207 LNGNANLFQEYFGRLQMTADNFRMMFLEKLSFS 239


>Z47074-2|CAA87377.2|  694|Caenorhabditis elegans Hypothetical
           protein F37H8.2 protein.
          Length = 694

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 376 LAGNANSVNEYIWRPQLYVHTFTNRF*TKLQFS 278
           L GNAN   EY  R Q+    F   F  KL FS
Sbjct: 207 LNGNANLFQEYFGRLQMTADNFRMMFLEKLSFS 239


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 502  LQNSHTDQHMSLEHQNACSFSH 437
            ++NSH +Q+MS  HQ++ S +H
Sbjct: 1305 MRNSHYNQNMSTSHQSSSSNNH 1326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,275,604
Number of Sequences: 27780
Number of extensions: 215940
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)