Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1991
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    27   0.50 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   0.86 
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    26   1.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   3.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    24   4.6  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    24   4.6  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   8.1  

>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 182 SWLSLCSPTSPGETGKASGPPVMSHFIKKSTLD*FFDGIPAYYKS 48
           SW    +    G     S P V SH       D +++GIPAY+++
Sbjct: 287 SWTDPGNEVIDGLISNQSIPVVYSHRTMDGFSDYYYNGIPAYFQN 331


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 131 RPFQFHQARWASKGSARRGEISVKKNPPSASKGDLTTHSS 250
           RPF       AS+  ++      K +PPS   G+L+ HSS
Sbjct: 257 RPFHKPGNSLASRLGSKPKSFKRKHSPPSEENGNLSFHSS 296


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 182 SWLSLCSPTSPGETGKASGPPVMSHFIKKSTLD*FFDGIPAYYKS 48
           SW    +    G     S P V SH       D +++GIP+Y+++
Sbjct: 287 SWTDPGNEVIDGLISNQSIPVVYSHRTMDGFSDYYYNGIPSYFQN 331


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 47   GICNMLEFHQKINLKCFFL*SGTLLVVL 130
            GIC+ +   Q++N+ CF L    L V+L
Sbjct: 1259 GICSKVVKDQEVNIPCFLLPFLVLNVIL 1286


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 203 KNPPSASKGDLTTHSSCFANEFSGGGARYPIRPIV 307
           KNP  ASK  +    S +    S G    P+ P +
Sbjct: 323 KNPTDASKTKIIQPPSSYGTGSSAGKTNPPVNPTI 357


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 194 SVKKNPPSASKGDLTTHSSCFANE 265
           ++K NP S S  D+TTH   FA +
Sbjct: 71  ALKANPNSVSIRDITTHYYHFAEK 94


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 96  FFYKVGHYWWS*GLSSFTRRGGRAKAQPGGVRL 194
           FF+ V ++ W  G+  F +      A+  G+RL
Sbjct: 359 FFHSVANFGWIYGMPLFFQSIKNEGAEKSGIRL 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,918
Number of Sequences: 5004
Number of extensions: 26460
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)