Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1991
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062... 31 0.19
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634... 31 0.25
03_05_0214 + 22040356-22040886 29 0.58
01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455 29 1.0
01_01_1213 - 9769268-9769975 29 1.0
10_01_0342 - 3764967-3765355,3766094-3766298 28 1.3
08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144 28 1.3
04_04_0095 - 22775340-22776017 28 1.3
07_03_0439 + 18212584-18213065,18214164-18215010 27 3.1
12_01_0741 + 6649988-6653065 26 5.4
09_01_0106 + 1673737-1674522,1674625-1675089 26 5.4
01_01_1153 - 9172529-9172678,9173416-9173642,9174139-9174310 26 5.4
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882... 26 7.2
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848... 25 9.5
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 25 9.5
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 25 9.5
06_03_1146 - 28004896-28005554,28005664-28005844 25 9.5
05_01_0385 - 3009557-3010497,3010749-3010782,3012311-3012609,301... 25 9.5
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 25 9.5
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 25 9.5
01_01_0479 - 3519778-3520306,3520517-3520716,3520974-3520976 25 9.5
>06_03_0726 +
23904350-23904964,23905986-23906021,23906158-23906256,
23906445-23906627,23907016-23907105,23907187-23907285,
23907584-23907688,23907786-23907926,23908009-23908296,
23908536-23908826
Length = 648
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 152 ARWASKGSARRGEISVKKNPPSASKGDLTTHSSCFANEFSGGG 280
A S G RR + PPS S D T SS F N+ GGG
Sbjct: 37 AAGGSGGLLRRSRSLSRFPPPSPSPEDAATPSSRFVNKVRGGG 79
>04_04_0050 -
22360294-22361804,22362087-22362378,22363367-22363420,
22363627-22363718,22364713-22364915,22365892-22366133,
22366205-22366330,22366800-22366907,22367394-22367457,
22367543-22367681,22367867-22368038,22368198-22368482
Length = 1095
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 285 RAPPPENSFAKQLL*VVRSPLEALGGFFLTLIS 187
R+PPP N+ + +V +PLE LG LTL S
Sbjct: 679 RSPPPSNTSDAECRYLVWTPLEGLGNRMLTLTS 711
>03_05_0214 + 22040356-22040886
Length = 176
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 140 QFHQARWASKGSARRGEISVKKNPPSASKGD 232
++ + RW +G+ RRGE + PPSA GD
Sbjct: 71 RWRRRRW-QQGTGRRGERVTTRAPPSAGDGD 100
>01_03_0219 - 13897138-13897525,13898798-13899062,13899359-13899455
Length = 249
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 152 ARWASKGSARRGEISVKKNPPSASKGDLTTHSSCFANEFSGGGAR 286
AR + +A RG + + +PP+ LTT S C ++EF GG R
Sbjct: 206 ARLQCRAAAARGGVRNRCSPPAP----LTTASWCSSSEFIGGKIR 246
>01_01_1213 - 9769268-9769975
Length = 235
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 152 ARWASKGSARRGEISVKKNPPSASKGDLTTHSSCFANEF-SGGGARYPIRP 301
A WAS + P+ S TT SS + E +GGGAR RP
Sbjct: 39 ALWASMAPSSASSYCGSAASPTPSTSTTTTSSSAASAEILAGGGARAATRP 89
>10_01_0342 - 3764967-3765355,3766094-3766298
Length = 197
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 179 RRGEISVKKNPPSASKGDLTTHSSCFANEFSGGG 280
++ + S K N + + G + H A+EFSGGG
Sbjct: 117 KKKKASPKSNYNTPTSGAIADHQEATADEFSGGG 150
>08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144
Length = 276
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 61 AGIPSKNQSKVLFFIKWDITGGPEAFPVSPGEVG 162
AGIP K ++ I W+I P P+S G+ G
Sbjct: 110 AGIPKKGLRTLILHIVWEIWNNPPC-PISRGQPG 142
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 111 GHYWWS*GLSSFTRRGGRAKAQPGGVRLALK-KTRRAPP 224
G +W L+ F RRGG A A GGV L+ + RR P
Sbjct: 71 GAFWGE--LARFERRGGGAPASVGGVVFELRWRPRRRSP 107
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 146 HQARWASKGSARRGEISVKKNPPSASKGDLTTHSSCFANEFSG 274
H+AR A+ S+ + NPPSA+ + H+ F+ +G
Sbjct: 39 HEARGAAAASSPTSPRAASTNPPSATSAE-PLHTCVFSGSVAG 80
>12_01_0741 + 6649988-6653065
Length = 1025
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 176 LSLCSPTSPGETGKASGPPVMSHFIKKSTLD 84
+ LC P + G + P +MSH +K+++D
Sbjct: 951 IGLCGPPLSKQCGYPTEPNMMSHTAEKNSID 981
>09_01_0106 + 1673737-1674522,1674625-1675089
Length = 416
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 131 RPFQFHQARWASKGSARRGEISVKK--NPPSASKGDLT 238
RPFQ A A+KG+AR EIS KK GDLT
Sbjct: 160 RPFQPCLATMAAKGTAR--EISTKKIAKKDHGEVGDLT 195
>01_01_1153 - 9172529-9172678,9173416-9173642,9174139-9174310
Length = 182
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 182 RGEISVKKNPPSASKGDLTTHSSC 253
R + K N P A GDLTTH C
Sbjct: 123 RQALRAKYNLPEAPCGDLTTHLFC 146
>09_04_0660 -
19286653-19287271,19287791-19287916,19288016-19288221,
19288417-19288549,19288632-19288713,19288906-19289035,
19289187-19289279,19289391-19289510,19289594-19289660,
19290079-19290137,19290719-19290943
Length = 619
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 167 CSPTSPGETGKASGPPVMSHFIK 99
C+ T PG +G SGP + S IK
Sbjct: 95 CASTCPGPSGSDSGPVICSAPIK 117
>10_05_0042 +
8481227-8481764,8482291-8482418,8483349-8483933,
8484033-8484061,8485221-8485612,8486038-8486454,
8486587-8486668,8487116-8487686
Length = 913
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 176 ARRGEISVKKNPPSASKGDLTTHSSCFAN 262
A++ E S ++ PPSA K T + + FAN
Sbjct: 398 AKKLEQSAQRKPPSAPKPMKTLNDATFAN 426
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 137 FQFHQARWASKGSARRGEISVKKNPPSA 220
+Q H A W S A I + PPSA
Sbjct: 306 YQSHDAHWLSTSQANAPPIPSSEPPPSA 333
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 161 ASKGSARRGEISVKKNPPSASKGDLTTHSSCFANEFSGGGAR 286
A KG + + K++P + S + ANE SGGG R
Sbjct: 322 APKGKKSKSKKQKKQSPSAVSDASAVVMDTDLANE-SGGGCR 362
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 152 ARWASKGSARRGEISVKKNPPSASKGDLTTHSSCFANEFSGGGARYPI 295
A A S G ++ PP + TT ++ AN+ SG A P+
Sbjct: 212 AAMAPSPSTTPGGVAQPPPPPGTDGANATTPAAPAANDRSGAAAAAPV 259
>05_01_0385 -
3009557-3010497,3010749-3010782,3012311-3012609,
3013633-3013996
Length = 545
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 24 SVCTFNLVGFVICWN 68
+V FN VGF CWN
Sbjct: 218 NVWKFNFVGFYSCWN 232
>03_02_0630 +
9964593-9964738,9965548-9965603,9965895-9966745,
9966848-9967046,9967246-9967425,9967591-9967967,
9968625-9968765
Length = 649
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 229 SFGGARRVFFNANLTPPG*AFARPPRLVKLERPQDHQ*CPTL*KK 95
SFG A V + TP G A + P R V++ P HQ T KK
Sbjct: 252 SFGAASPVSVITSTTPSGAARSTPLRAVRMS-PGSHQKYSTPPKK 295
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 61 AGIPSKNQSKVLFFIKWDITGGPEAFPVSPGEVGEQR 171
+GIP ++ + ++ G EAF V P E G QR
Sbjct: 29 SGIPPSLHQRLYRKLADEVFDGGEAFSVEPCEGGRQR 65
>01_01_0479 - 3519778-3520306,3520517-3520716,3520974-3520976
Length = 243
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 170 GSARRGEISVKKNPPSASKGDLTTHSSCFANEFSGGG 280
G G + ++PP+A D++ S+C N GGG
Sbjct: 151 GGGSGGATATTQSPPNAGSSDISEVSACGGN---GGG 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,464,431
Number of Sequences: 37544
Number of extensions: 218155
Number of successful extensions: 518
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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