Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1991
         (313 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    26   4.8  
AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine r...    26   6.4  
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    25   8.4  

>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical
           protein F21C10.7 protein.
          Length = 2541

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 14  LRGVRMHF*FSGICNMLEFHQKINLK 91
           LR V MHF F  I   L  +Q INL+
Sbjct: 127 LREVCMHFGFFSILTQLHINQPINLR 152


>AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine
           receptor, class z protein79 protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 120 SNVPLYKKKHFRLIF*WNSSILQIPLN 40
           S+VPL  KK FR++F  N S +  P N
Sbjct: 291 SSVPLKWKKFFRVLFDMNKSSVVKPQN 317


>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
           protein T13F2.3a protein.
          Length = 1074

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 201 KKTRRAPPKET*QLIAAASRMNFLEGGPGT 290
           ++ R+ PP +T Q     S  N  +GG GT
Sbjct: 53  EQPRQQPPPQTWQRTPTMSPANIFQGGSGT 82


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 140 QFHQARWASKGSARR 184
           +FH  RWA  GSAR+
Sbjct: 800 EFHATRWAFDGSARK 814


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,179,779
Number of Sequences: 27780
Number of extensions: 161155
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)