Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1991
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.0  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      20   6.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   8.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 120 SNVPLYKKKHFRLI 79
           SN P+YK K+ R I
Sbjct: 314 SNFPIYKYKYIREI 327


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 120 SNVPLYKKKHFRLI 79
           SN P+YK K+ R I
Sbjct: 314 SNFPIYKYKYIREI 327


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 51 FVICWNSIKKSI*SAF 98
          F + WN+ + SI SAF
Sbjct: 7  FCLRWNNYQSSITSAF 22


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 51 FVICWNSIKKSI*SAF 98
          F + WN+ + SI SAF
Sbjct: 7  FCLRWNNYQSSITSAF 22


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 141 WKGLRTTSNV 112
           WKG++TT  V
Sbjct: 192 WKGVKTTGKV 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,728
Number of Sequences: 438
Number of extensions: 1861
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)