Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1990
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q190P4 Cluster: Putative uncharacterized protein; n=2; ...    33   5.5  
UniRef50_A5GFH5 Cluster: 40-residue YVTN family beta-propeller r...    33   7.3  
UniRef50_A3M8R9 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  

>UniRef50_Q190P4 Cluster: Putative uncharacterized protein; n=2;
           Desulfitobacterium hafniense|Rep: Putative
           uncharacterized protein - Desulfitobacterium hafniense
           (strain DCB-2)
          Length = 240

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = +2

Query: 476 YNQILHKNLGSTIFRSRSILKSYLNSNSAEHAQVVPPVRVPQFLHEFFREIPSSCNQTIT 655
           Y  I+ + L   ++  + +L  YL S     AQ++   RV +  +  F+E+      T+T
Sbjct: 36  YFLIMFQKLFFALYNPKLVLYDYLESKFERDAQLIR--RVDKLDNGQFQELVIQQLSTLT 93

Query: 656 KGVSTLSIVDEINMMNFN 709
           K + TL+I  E+   + N
Sbjct: 94  KSIDTLAINQEVMQADIN 111


>UniRef50_A5GFH5 Cluster: 40-residue YVTN family beta-propeller
           repeat protein precursor; n=3; Bacteria|Rep: 40-residue
           YVTN family beta-propeller repeat protein precursor -
           Geobacter uraniumreducens Rf4
          Length = 470

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
 Frame = +2

Query: 62  TKVRLNPTSSFNYV---IIRRGTLLALSLPFITISSLTQPYPIRWGRHKRKKNFLF-HSR 229
           + + ++PT    YV   +    +++ LS   I  + +T+P+P+R G+  R  + L+   R
Sbjct: 294 SSILIDPTGKRAYVFNTLANTISVIDLSKRAIVSTIVTEPWPVR-GQFNRSGDALYVIQR 352

Query: 230 LSAVISTLTPLSVISSVISFCHTPSMASSID 322
           LS+ ++ L P S++ +   +  T + A  +D
Sbjct: 353 LSSYLTVLNPASLVVTKRKYIGTGANAVKVD 383


>UniRef50_A3M8R9 Cluster: Putative uncharacterized protein; n=1;
            Acinetobacter baumannii ATCC 17978|Rep: Putative
            uncharacterized protein - Acinetobacter baumannii (strain
            ATCC 17978 / NCDC KC 755)
          Length = 1216

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 518  RSRSILKSYLNSNSAEHAQVVPPVRVPQFLHEFFREIPSSCNQ 646
            +SR+I  SYLNS + ++  +        FLH FF+EI S  N+
Sbjct: 1077 KSRTISNSYLNSRNLQNFFLSDFKNFYSFLHVFFKEISSFSNE 1119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,614,841
Number of Sequences: 1657284
Number of extensions: 12948531
Number of successful extensions: 32539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32521
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)