Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1990
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    30   0.30 
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    29   0.91 
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    27   2.1  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    26   4.9  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   8.5  

>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 446 YATSIKLYQKYNQILHKNLGSTIFRSRSILKSYLNSNSAEHAQVVPPVRVPQFLHEFFRE 625
           Y +S+KL Q+Y++ +HK L + +  + S       S   E  QV+  + +P+   +F ++
Sbjct: 91  YRSSVKLIQEYSEKVHKKLQAKLLENPS-----ETSPEIERLQVLSQINLPEVRSKFHKK 145


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 446 YATSIKLYQKYNQILHKNLGSTIFRSRSILKSYLNSNSAE 565
           Y  S  LY  Y Q++   L +  F+  S++ +YL  +SA+
Sbjct: 586 YVASTALYSSYTQLISALLEADKFKGPSVVLAYLPYHSAD 625


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 303 QWLLRSTSFPSTMSIHLLVTCISSLRMTCP 392
           +WL R T F +T  + +LV C+  L   CP
Sbjct: 209 RWLDRITRFYATFHLIVLVVCMICLLAKCP 238


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 205 FPLVPTPPNGIRLSQRRNCYKRQT*C*KCSASNNYIIK 92
           F + PT P G+      N  K ++ C    A+NNY +K
Sbjct: 103 FSVDPTTPTGVCAVVLSNNNKNRSLCTNLGAANNYKLK 140


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 218 FHSRLSAVISTLTPLSVISSVISFCHTPSMASSIDLFPLYHVHTSP 355
           FH  ++ +     P S+  S     ++P MA      P+Y+ H  P
Sbjct: 485 FHQSMATLPPGAVPTSIPQSYYPI-YSPEMAMPQSYSPMYYTHNPP 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,508
Number of Sequences: 5004
Number of extensions: 60849
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)