Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1990
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)                   30   2.3  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)                    29   3.0  
SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_5100| Best HMM Match : Drf_FH1 (HMM E-Value=7.5)                    29   5.2  
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_34948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_25653| Best HMM Match : U-box (HMM E-Value=0.0064)                  28   9.1  
SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064)                  28   9.1  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   9.1  
SB_33591| Best HMM Match : DnaJ (HMM E-Value=0.0056)                   28   9.1  

>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 984

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +2

Query: 491 HKNLGSTIFRSRSILKSYLNSNSAEHAQVVPPVRVPQFLHEFFREIPSSCNQTITKGV 664
           HK+LG+ +  SRS LK Y+N+N    A+VV  V     L EF +  P +C     +G+
Sbjct: 486 HKHLGAAL-GSRSHLKQYVNNN----AKVVDWVSEIAKLAEFAKSQPQACYAAFAQGL 538


>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
          Length = 248

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 335 YHVHTSPSHMHLLSTHDMSIPR*PSAL--L*QRYQLISIYATSIKLYQKYNQILHKNLGS 508
           YH H   S +        S+P   S +    ++Y+L+   +T  +L +KY+ +LH   GS
Sbjct: 10  YHPHLHGSTISRFGKKYHSLPPYGSTISRFSKKYRLLLHGSTISRLSKKYHPLLH---GS 66

Query: 509 TIFRSRSILKSYLNSNSA 562
           TI  +R+ + S   S +A
Sbjct: 67  TISSARNTISSSFPSTTA 84


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 172 LSH*VGSAQAEKKFSIPFSSISRHLNTNSSLCHII--CHIFLSHTINGFFD 318
           L H      AE+   +P   I +  NTN  + HI+   H +L H   G +D
Sbjct: 483 LPHKYNKDLAEQSIKVPLGVIFKDENTNEDMLHILQQFHGYLPHLDEGQYD 533


>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
          Length = 869

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 406 RLTWYGHVMRREEMHVTRRCM 344
           +L WYGHV+R EE  + R+ +
Sbjct: 780 QLRWYGHVIRMEESRIPRQVL 800


>SB_24132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 488 LHKNLGSTIFRSRSILKSYLNSNSAEHAQVVPPVRVPQFLHEFFREIPSSCNQTITKGVS 667
           L+ +  ST +  R+ L    NS+    A   P  R   ++HE  +  PSS N  + K   
Sbjct: 362 LYSSTTSTAYELRADLGHKRNSSPPLPAATSPQKRARHYIHEAKKGEPSSSNAQLAKAKG 421

Query: 668 TLS 676
            ++
Sbjct: 422 VIT 424


>SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 199 AEKKFSIPFSSISRHLNTNSSLCHII--CHIFLSHTINGFFD 318
           AE+   +P   I +  NTN  + HI+   H +L H   G +D
Sbjct: 264 AEQSIKVPLGVIFKDENTNEDMLHILQQFHGYLPHLDEGQYD 305


>SB_5100| Best HMM Match : Drf_FH1 (HMM E-Value=7.5)
          Length = 192

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 202 PLVPTPPNGIRLSQRRNC 149
           P+VPTPPN + L  R NC
Sbjct: 135 PIVPTPPNPLSLLLRINC 152


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 95  NYVIIRRGTLLALSLPFITISSLTQPYPIRWG-RHKRKKNFLFHSRLSAVISTLT 256
           +Y+II    ++ ++   IT SS + P P+     H  ++++L H  +  +I  +T
Sbjct: 37  HYIIIIIIIVVVITTTIITSSSSSSPLPLSSSHHHHHRRHYLCHHHIIIIIVAIT 91


>SB_34948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 115 RNTSSIKSAFYNNFFFDSTLSH*VGSAQAEKKFSIPFSSISRHLNTNSSLCHIIC 279
           +   +I + FY+NF    TLS  V + +A  + S+     S   +T     H IC
Sbjct: 68  KREKTIYALFYSNFSRPVTLSQNVSTNEATFRLSVTKREKSGGSSTQGGAAHAIC 122


>SB_25653| Best HMM Match : U-box (HMM E-Value=0.0064)
          Length = 336

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 385 HVHTTLTVRSFITTISINKYLRHINKTV 468
           H+H TL  R    T+S+NK L+ +  T+
Sbjct: 9   HLHATLMGRHLHATLSLNKQLKELTITI 36


>SB_23234| Best HMM Match : U-box (HMM E-Value=0.0064)
          Length = 349

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 385 HVHTTLTVRSFITTISINKYLRHINKTV 468
           H+H TL  R    T+S+NK L+ +  T+
Sbjct: 9   HLHATLMGRHLHATLSLNKQLKELTITI 36


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +2

Query: 278 VISFCHTPSMASSIDLFPLYHVHTSPSHMH--LLSTHDMSIPR*PSALL*QRYQLISI-Y 448
           +I   H PS +SSI +  + H H  PS     ++  H    P   S+++      I I +
Sbjct: 293 IIHHHHHPSSSSSIIIIIIIHHHHHPSSSSSIIIIIHHHHHPSSSSSIIHHHPSSIIIHH 352

Query: 449 ATSIKLYQKYNQILHKNLGSTIFRSRSILKSYLNSNSA 562
             S  +    + I+H +  S I    SI+    +S+S+
Sbjct: 353 HPSSSIIHHPSSIIHHHPSSIIHHPSSIIHHPSSSSSS 390


>SB_33591| Best HMM Match : DnaJ (HMM E-Value=0.0056)
          Length = 219

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 485 ILHKNLGSTIFRSRSILKSYLNSNSAEHAQVVP 583
           +L K L S   R   + KS  NS+SAE  +VVP
Sbjct: 1   MLPKQLKSGTIRHGKLFKSTANSDSAESNEVVP 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,292,940
Number of Sequences: 59808
Number of extensions: 424328
Number of successful extensions: 1351
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)