Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1990
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF039053-1|AAC25883.1| 341|Caenorhabditis elegans Seven tm rece... 29 2.6
Z92803-1|CAB07242.2| 384|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF304126-1|AAG50239.1| 384|Caenorhabditis elegans RING and zinc... 29 4.5
L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncog... 28 6.0
AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isofor... 28 6.0
AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein. 28 6.0
AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine re... 28 6.0
AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell... 28 6.0
AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell... 28 6.0
>U53181-7|AAA93487.1| 472|Caenorhabditis elegans Hypothetical
protein F36D4.4 protein.
Length = 472
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 20 YLRRVIFFLTYSLVTKVRLNPTSSFNYVIIRRGTLLALS--LPFITISSLTQPYPIRWGR 193
Y + + + T++ L S F VI+R LL + L F T + YP+ + R
Sbjct: 84 YFANSFYNINLDIHTRIHLFQLSRFALVILRVCNLLTIFNLLVFTTNEYIVIRYPLHYRR 143
Query: 194 HKRKKNFLFHSRLSAVISTLTPLSVISS 277
+ R+K L + +S + L ++ S
Sbjct: 144 YFRRKFVLIILAICWTMSIMMALGILYS 171
>AF039053-1|AAC25883.1| 341|Caenorhabditis elegans Seven tm
receptor protein 52 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 207 FFRLCRPHLMG*G*VKEEIVIKGRLNARSVPRRII 103
F+ C+P G VKEEI+ + L+ +S PR +I
Sbjct: 147 FYLFCQPDQFGDDYVKEEILKRYELDIKSAPRFLI 181
>Z92803-1|CAB07242.2| 384|Caenorhabditis elegans Hypothetical
protein K01G5.1 protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 470 QKYNQILHKNLGSTIFRSRSILKSYLNSNSAEHAQVVPPVRVPQFLHEFFR 622
+K +IL+K GS ++ ++ K N+A V PVR PQFL + R
Sbjct: 126 EKDGKILYK--GSALYGAKEA-KDTAKGNAASGYNRVGPVRAPQFLRQTVR 173
>AF304126-1|AAG50239.1| 384|Caenorhabditis elegans RING and zinc
finger protein protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 470 QKYNQILHKNLGSTIFRSRSILKSYLNSNSAEHAQVVPPVRVPQFLHEFFR 622
+K +IL+K GS ++ ++ K N+A V PVR PQFL + R
Sbjct: 126 EKDGKILYK--GSALYGAKEA-KDTAKGNAASGYNRVGPVRAPQFLRQTVR 173
>L15347-1|AAA28142.1| 813|Caenorhabditis elegans raf proto-oncogene
protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 347 TSPSHMHLLSTHDMSIPR*PSALL*QRYQLISIYATSIKLYQKYNQILHKNLG 505
T+P+ H S +S+PR S+ + ++ Q + + S LY K++ LH G
Sbjct: 13 TTPTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSG 65
>AY493413-1|AAR86712.1| 813|Caenorhabditis elegans LIN-45 isoform 2
protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 347 TSPSHMHLLSTHDMSIPR*PSALL*QRYQLISIYATSIKLYQKYNQILHKNLG 505
T+P+ H S +S+PR S+ + ++ Q + + S LY K++ LH G
Sbjct: 13 TTPTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSG 65
>AY455928-1|AAR26307.1| 813|Caenorhabditis elegans LIN-45 protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 347 TSPSHMHLLSTHDMSIPR*PSALL*QRYQLISIYATSIKLYQKYNQILHKNLG 505
T+P+ H S +S+PR S+ + ++ Q + + S LY K++ LH G
Sbjct: 13 TTPTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSG 65
>AF078792-1|AAC26947.2| 352|Caenorhabditis elegans Serpentine
receptor, class h protein40 protein.
Length = 352
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +2
Query: 5 PPTSSYLRRVIFFLTYSLVTKVRLNPTSSFN-YVIIRRGT-LLALSLPFITISSL-TQPY 175
PP SSYL F T + V + TSS++ ++I+R+ T + ++P++ + L T
Sbjct: 10 PPNSSYLASPEFISTGCHIVSVFMIITSSYSAFLIVRKSTPTMKSTVPYMIRAHLCTMFC 69
Query: 176 PIRWG 190
WG
Sbjct: 70 DFTWG 74
>AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform b protein.
Length = 614
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 347 TSPSHMHLLSTHDMSIPR*PSALL*QRYQLISIYATSIKLYQKYNQILHKNLG 505
T+P+ H S +S+PR S+ + ++ Q + + S LY K++ LH G
Sbjct: 55 TTPTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSG 107
>AC024204-6|AAF36042.1| 813|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform a protein.
Length = 813
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 347 TSPSHMHLLSTHDMSIPR*PSALL*QRYQLISIYATSIKLYQKYNQILHKNLG 505
T+P+ H S +S+PR S+ + ++ Q + + S LY K++ LH G
Sbjct: 13 TTPTSPHCPSPRLISLPRCASSSIDRKDQASPMASPSTPLYPKHSDSLHSLSG 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,027,183
Number of Sequences: 27780
Number of extensions: 323047
Number of successful extensions: 841
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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