Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1988
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4VCU6 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q14571 Cluster: Inositol 1,4,5-trisphosphate receptor t...    34   3.9  
UniRef50_Q5E1F1 Cluster: MshQ; n=1; Vibrio fischeri ES114|Rep: M...    33   5.1  
UniRef50_Q8N4S0 Cluster: Coiled-coil domain-containing protein 8...    33   5.1  
UniRef50_UPI00015A4A81 Cluster: Probable phospholipid-transporti...    33   8.9  
UniRef50_UPI0000F33B29 Cluster: Inositol 1,4,5-trisphosphate rec...    33   8.9  

>UniRef50_A4VCU6 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 352

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +2

Query: 149 FSSHLVFCERQFLSRFVCSHRKGARYS*Y*PFEYN*YYTRYNYLVYLLFILVF-IPYVSE 325
           F SH ++C+   LS    + +    Y  Y  F++  Y+ R++Y    L    F I Y  +
Sbjct: 39  FPSHFLYCQNLLLSSDFLNFQILTDYCYYLHFDFTHYFIRFDYFTNCLSCFDFLIRYYQQ 98

Query: 326 IRQFVYSLNNIFIYATAVKGL 388
           I  + + +N  F+    ++ L
Sbjct: 99  IISYWFIVNCHFVVTNYIRQL 119


>UniRef50_Q14571 Cluster: Inositol 1,4,5-trisphosphate receptor type
            2; n=50; Euteleostomi|Rep: Inositol 1,4,5-trisphosphate
            receptor type 2 - Homo sapiens (Human)
          Length = 2701

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 38   LHHRLGPRF*KILEGPAWFFSNEMYNIQNITRILQIVFS 154
            L  R GPRF + L GPAW + N +  +Q++   L+  FS
Sbjct: 1580 LSARSGPRFKEALGGPAWDYRNIIEKLQDVVASLEHQFS 1618


>UniRef50_Q5E1F1 Cluster: MshQ; n=1; Vibrio fischeri ES114|Rep: MshQ
           - Vibrio fischeri (strain ATCC 700601 / ES114)
          Length = 1464

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +2

Query: 446 PFDGFQHMSRHFYALSITGR*AHGLNLREFANTNPSKSKCCAESTTGSESRPTEKIRRET 625
           P D     +  ++  SITGR    LNL  F + N S+S+ C   T+  + +    I    
Sbjct: 80  PDDSCDDGNGGYHQCSITGRNTPALNLGSFIHNNSSRSETCDSGTSYFDKKKYSNITLRG 139

Query: 626 QWVGICGLSSNGEL 667
              G  G +S  +L
Sbjct: 140 TCDGYLGHNSQEQL 153


>UniRef50_Q8N4S0 Cluster: Coiled-coil domain-containing protein 82;
           n=15; Theria|Rep: Coiled-coil domain-containing protein
           82 - Homo sapiens (Human)
          Length = 544

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -3

Query: 526 QVEPVSSSTRNTQGVKMTTHMLKSVKRFTLYGTNELHYLH 407
           Q E      +N QG K+TT  LK VK+ +LY  ++ HY H
Sbjct: 301 QDEEGDEENKNQQGEKLTTSQLKLVKQNSLYSFSD-HYTH 339


>UniRef50_UPI00015A4A81 Cluster: Probable phospholipid-transporting
            ATPase IF (EC 3.6.3.1) (ATPase class I type 11B) (ATPase
            IR).; n=1; Danio rerio|Rep: Probable
            phospholipid-transporting ATPase IF (EC 3.6.3.1) (ATPase
            class I type 11B) (ATPase IR). - Danio rerio
          Length = 980

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 125  ITRILQIVFSSHLVFCERQFLSRFVCSHRKGARYS*Y*PFEYN*YYTRYNYLVYLLFILV 304
            I  ++Q  F  ++ F   QFL +F C   +   Y       YN  +T    LVY LF  +
Sbjct: 774  IATLVQYFFYKNVCFITPQFLYQFFCLFSQQTLYDSVYLTLYNICFTSLPILVYSLFEQL 833

Query: 305  FIPYVSEIRQFVY---SLNNIFIYAT 373
              P+V + +  +Y   S N++  + T
Sbjct: 834  VHPHVLQSKPALYRDISKNSLLSFKT 859


>UniRef50_UPI0000F33B29 Cluster: Inositol 1,4,5-trisphosphate receptor
            type 2 (Type 2 inositol 1,4,5- trisphosphate receptor)
            (Type 2 InsP3 receptor) (IP3 receptor isoform 2)
            (InsP3R2).; n=1; Bos taurus|Rep: Inositol
            1,4,5-trisphosphate receptor type 2 (Type 2 inositol
            1,4,5- trisphosphate receptor) (Type 2 InsP3 receptor)
            (IP3 receptor isoform 2) (InsP3R2). - Bos Taurus
          Length = 2400

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 38   LHHRLGPRF*KILEGPAWFFSNEMYNIQNITRILQIVFS 154
            L  R GPRF + L GP+W + N +  +Q++   L+  FS
Sbjct: 1279 LSARSGPRFKEALGGPSWDYRNIIEKLQDVVASLEQQFS 1317


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,772,730
Number of Sequences: 1657284
Number of extensions: 11083107
Number of successful extensions: 25375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25358
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)